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645 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			MTX
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE97178	Hybrid stomach-intestinal chromatin states underlie human Barrett’s metaplasia	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BED BW MTX TSV SRA Run Selector	Ramesh Shivdasani	Jun 03, 2021
GSE98448	Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	53	BEDPE MTX TSV TXT	Milos Nikolic	Apr 25, 2018
GSE98600	BCG reprogramming of hematopoietic stem cells generates protective innate immunity against tuberculosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	85	MTX TXT	Luis Barreiro	Dec 13, 2017
GSE110038	Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	55	BED MTX TSV	Tully Michael Underhill	Dec 05, 2019
GSE111839	Transcriptional and Epigenomic Landscapes of CNS and non-CNS Vascular Endothelial Cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX NARROWPEAK TAR TSV TXT SRA Run Selector	Mark F Sabbagh	Sep 06, 2018
GSE117529	RNA/WES/ATAC/scRNA sequencing of murine melanoma primary and LN metastases	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	58	BW MTX TSV TXT SRA Run Selector	Nathan Edward Reticker-Flynn	Jun 14, 2021
GSE118252	The Lineage-Defining Transcription Factors SOX2 and NKX2-1 Determine Lung Cancer Cell Fate and Shape the Tumor Immune Microenvironment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	42	BW MTX TSV	Trudy Oliver	Oct 16, 2018
GSE118726	The NSL complex–mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	57	BW MTX TSV SRA Run Selector	Asifa Akhtar	Jan 13, 2019
GSE119943	Single-Cell Transcriptomics Identifies TOX as a Key Transcriptional Regulator of Progenitor-Like CD8 T Cells in Chronic Infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	60	BW MTX TSV	Tuoqi Wu	Apr 16, 2019
GSE120974	Single-cell RNA-seq Reveals a Developmental Hierarchy and Oncogenic Networks for Initiation of Medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	FPKM_TRACKING MTX TSV TXT WIG	Richard Lu	Aug 30, 2019
GSE121527	Reconstruction of the global neural crest gene regulatory network in vivo	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Gallus gallus	213	BED MTX TSV TXT	Tatjana Sauka-Spengler	Oct 09, 2019
GSE121599	Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	MTX TSV	Hongbo Chi	Dec 27, 2018
GSE121731	Treg cells adapting to Th2 environment maintain Treg signature despite destabilizing Foxp3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	35	BED BW MTX TSV SRA Run Selector	Fred P. Davis	Aug 28, 2024
GSE122871	Single-cell Transcriptomics Resolves Intermediate Glial Progenitors and Uncovers a Pivotal Determinant of Cell Fate and Gliomagenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	229	BEDGRAPH MTX NARROWPEAK TSV TXT SRA Run Selector	Richard Lu	Apr 11, 2019
GSE124901	Functional stem cell aging dictated by skin tissue microenvironment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED MTX TSV TXT SRA Run Selector	Yejing Ge	Dec 31, 2019
GSE125711	Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	67	MTX TSV	Tatjana Sauka-Spengler	Nov 27, 2019
GSE126074	Simultaneous profiling of transcriptome and chromatin accessibility in single nucleus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	36	MTX TSV SRA Run Selector	Song Chen	Feb 05, 2019
GSE126117	RNA-seq, ATAC-seq and Hi-C profiles of B cells and naïve and activated T cells from human peripheral blood	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	30	MTX TXT	Gordon K Smyth	Jan 21, 2021
GSE127937	Early commitment genes drive fast, irreversible commitment to human embryonic stem cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	43	MTX TSV TXT	Silvia DM Santos	Apr 19, 2020