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67 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			PAIR
GSE8486	Whole genome DNAse hypersensitivity in human CD4+ T-cells	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	78	GFF PAIR	Sean Davis	Nov 19, 2007
GSE17616	A map of open chromatin in human pancreatic islets	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	5	BED PAIR WIG SRA Run Selector	Kyle Jeffrie Gaulton	Jan 31, 2010
GSE20136	Genome-wide nucleosome occupancy profiling by high throughput sequencing, and microarray analysis of RNA abundance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Caenorhabditis elegans	12	CALLS PAIR WIG SRA Run Selector	Jason D Lieb	Mar 02, 2010
GSE20472	Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster	30	CEL CHP PAIR	Karen Adelman	Oct 18, 2010
GSE21068	Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Expression profiling by array	Homo sapiens Rattus norvegicus	12	GFF PAIR TXT WIG SRA Run Selector	Pei-Yin Hsu	Apr 29, 2010
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010
GSE26833	Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	38	CEL PAIR TXT	Hao Wu	Mar 30, 2011
GSE27215	IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED PAIR	Meinrad Busslinger	Feb 11, 2011
GSE27436	Dynamic hydroxymethylation of DNA marks differentiation-driven enhancers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	PAIR SAM WIG	Aurelien Serandour	Jun 04, 2012
GSE27866	Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	19	PAIR WIG	Dirk Schuebeler	Jun 21, 2011
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE29064	Structural mapping of regulatory function of histone H3 and H4 residues	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Saccharomyces cerevisiae	135	BED PAIR TXT	Inkyung Jung	Dec 05, 2012
GSE29183	Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	5	PAIR	Christelle Cayrou	Jul 28, 2011
GSE29395	Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	80	CEL GFF PAIR TXT	Jigui Shan	May 20, 2011
GSE30206	DNA binding factors shape the mouse methylome at distal regulatory regions.	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array Expression profiling by high throughput sequencing	Mus musculus	23	PAIR WIG	Dirk Schuebeler	Dec 09, 2011
GSE30741	Kc cells from Drosophila melanogaster during ecdysone treatment and CP190 knockdown	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	26	BED PAIR WIG	Ashley M Wood	Oct 14, 2011
GSE31602	Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BEDGRAPH GFF PAIR PDF TXT WIG SRA Run Selector	Jorja Henikoff	Dec 05, 2011
GSE31842	An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Methylation profiling by genome tiling array	Mus musculus	50	CEL PAIR WIG	Ana Sevilla	Feb 25, 2021
GSE31939	VDR/RXR and TCF4/beta-Catenin Cistromes in Colonic Cells of Colorectal Tumor Origin: Impact on c-FOS and c-MYC Gene Expression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	19	BED CALLS PAIR TIFF TXT SRA Run Selector	Mark B Meyer	Nov 22, 2011
GSE33518	Identification and characterization of Hoxa9 binding sites in hematopoietic cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	CEL PAIR WIG	Yongsheng Huang	Dec 05, 2011