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67 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			PAIR
GSE20472	Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster	30	CEL CHP PAIR	Karen Adelman	Oct 18, 2010
GSE36737	BEAF-32 insulator regulates gene expression of genes involved in cell polarity and neoplastic growth.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Drosophila melanogaster	14	PAIR	Gurudatta Baraka Vishwanathan	Jul 06, 2012
GSE49928	Genome-wide effects of Spt6 on RNA pol II and Histone H3 occupancy in budding yeast	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BW PAIR	David L. Bentley	Aug 16, 2013
GSE55270	ChIP-chip from HEK293-RPF-1 stable transfectants expressing the HA-tagged RPF-1 transcription factor	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	GFF PAIR	gabriele bucci	Sep 06, 2016
GSE27215	IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED PAIR	Meinrad Busslinger	Feb 11, 2011
GSE29183	Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	5	PAIR	Christelle Cayrou	Jul 28, 2011
GSE8486	Whole genome DNAse hypersensitivity in human CD4+ T-cells	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	78	GFF PAIR	Sean Davis	Nov 19, 2007
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE76605	Massive reshaping of genome - nuclear lamina interactions during oncogene induced senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	37	PAIR	Carolyn A de Graaf	Aug 17, 2017
GSE59779	Studies of regulation of mouse X inactivation and genes escaping XCI	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Mus musculus x Mus spretus	70	BED BIGWIG GFF PAIR TXT XLS	Xinxian Deng	Feb 20, 2015
GSE83400	GDF6-induced BMP signaling reawakens a neural crest identity in melanoma to prevent cell death and differentiation	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens	37	PAIR XLS	Dr Yvonne Edwards, PhD	Feb 14, 2018
GSE17616	A map of open chromatin in human pancreatic islets	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	5	BED PAIR WIG SRA Run Selector	Kyle Jeffrie Gaulton	Jan 31, 2010
GSE34941	Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	428	BED BIGWIG PAIR	Huimin Geng	Nov 27, 2012
GSE60859	The transcription factor FOXL2 mobilizes estrogen signaling in the maintenance of ovarian granulosa cells identity	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	34	BED PAIR TXT WIG	Adrien Georges	Oct 28, 2014
GSE46630	The newly identified transcription factor M1BP ad GAGA factor orchestrate distinct mechanisms of transcriptional regulation on paused genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	10	BEDGRAPH PAIR	David Scott Gilmour	Aug 13, 2013
GSE50585	Trophoblast giant cell underrepresentation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome variation profiling by genome tiling array	Mus musculus	41	PAIR TXT	Roberta L Hannibal	May 29, 2014
GSE51003	A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals novel candidate regulatory elements for male infertility	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	PAIR	Ann Harris	Sep 19, 2013
GSE52181	A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	PAIR	Ann Harris	Nov 08, 2013
GSE31602	Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BEDGRAPH GFF PAIR PDF TXT WIG SRA Run Selector	Jorja Henikoff	Dec 05, 2011
GSE52349	The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BEDGRAPH GFF PAIR WIG	Jorja Henikoff	Apr 15, 2014