GEO Browser - GEO

Series

Samples

Platforms

DataSets

67 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			PAIR
GSE20136	Genome-wide nucleosome occupancy profiling by high throughput sequencing, and microarray analysis of RNA abundance	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	12	CALLS PAIR WIG SRA Run Selector	Jason D Lieb	Mar 02, 2010
GSE20472	Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	30	CEL CHP PAIR	Karen Adelman	Oct 18, 2010
GSE21068	Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens Rattus norvegicus	12	GFF PAIR TXT WIG SRA Run Selector	Pei-Yin Hsu	Apr 29, 2010
GSE26833	Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	38	CEL PAIR TXT	Hao Wu	Mar 30, 2011
GSE27436	Dynamic hydroxymethylation of DNA marks differentiation-driven enhancers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	PAIR SAM WIG	Aurelien Serandour	Jun 04, 2012
GSE29064	Structural mapping of regulatory function of histone H3 and H4 residues	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	135	BED PAIR TXT	Inkyung Jung	Dec 05, 2012
GSE29395	Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	80	CEL GFF PAIR TXT	Jigui Shan	May 20, 2011
GSE30741	Kc cells from Drosophila melanogaster during ecdysone treatment and CP190 knockdown	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	26	BED PAIR WIG	Ashley M Wood	Oct 14, 2011
GSE31842	An Esrrb and Nanog Cell Fate Regulatory Module Controlled by Feed Forward Loop Interactions.	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	50	CEL PAIR WIG	Ana Sevilla	Feb 25, 2021
GSE31939	VDR/RXR and TCF4/beta-Catenin Cistromes in Colonic Cells of Colorectal Tumor Origin: Impact on c-FOS and c-MYC Gene Expression	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	19	BED CALLS PAIR TIFF TXT SRA Run Selector	Mark B Meyer	Nov 22, 2011
GSE33518	Identification and characterization of Hoxa9 binding sites in hematopoietic cells	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	CEL PAIR WIG	Yongsheng Huang	Dec 05, 2011
GSE34684	Nanog-like Regulates Endoderm Formation through the Mxtx2-Nodal Pathway	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	12	CALLS PAIR WIG YLF	Cong Xu	Dec 28, 2011
GSE34941	Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	428	BED BIGWIG PAIR	Huimin Geng	Nov 27, 2012
GSE36737	BEAF-32 insulator regulates gene expression of genes involved in cell polarity and neoplastic growth.	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	14	PAIR	Gurudatta Baraka Vishwanathan	Jul 06, 2012
GSE38771	Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	BEDGRAPH CALLS PAIR TAB	Peter J Park	Jul 16, 2012
GSE40540	IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Mus musculus	153	BEDGRAPH CEL PAIR	John Paterson Thomson	Sep 12, 2012
GSE41195	Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding	Expression profiling by array Expression profiling by genome tiling array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli K-12 Escherichia coli str. K-12 substr. MG1655 Escherichia coli str. K-12 substr. MG1655star	48	CALLS GFF PAIR TXT WIG	Kevin S Myers	Jun 20, 2013
GSE41955	The RUNX2 Cistrome in Osteoblasts: Characterization, Downregulation Following Differentiation and Relationship to Gene Expression	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BED BEDGRAPH CALLS PAIR	Mark B Meyer	Apr 24, 2014
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE43103	H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	BEDGRAPH PAIR TXT WIG	Gillian Taylor	Aug 23, 2013