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146 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			RDS
GSE173834	The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	RDS SRA Run Selector	Michael Dorrity	May 05, 2021
GSE277747	Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1	RDS	Neville Sanjana	Sep 22, 2024
GSE151408	Erythrophagocytosis drives anti-inflammatory programming of liver macrophages (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 RDS TBI TSV SRA Run Selector	Marc Pfefferle	Aug 13, 2020
GSE166547	Cell type-specific chromatin accessibility in kidney.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED CSV RDS SRA Run Selector	Jingping Yang	Sep 30, 2021
GSE167454	Neural tube closure defect: Single Cell ATAC and single cell mRNA seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX RDS TSV SRA Run Selector	Rachel Keuls	Feb 24, 2021
GSE196989	Durable Alterations of Hematopoiesis and Chromatin post-COVID-19 [snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	RDS TXT	Jin-Gyu Cheong	Jul 01, 2023
GSE201402	mouse retina 10x Genomics Multiome ATAC+RNA data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	2	RDS	Katy Rezvani	May 02, 2022
GSE232774	Epigenomic profiling of mouse nucleus accumbens at single-cell resolution	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV RDS	Parth Bhatia	May 18, 2023
GSE245957	txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	2	RDS TBI TSV TXT	Ryan Mulqueen Mulqueen	Oct 20, 2023
GSE268331	GENERATION OF MOUSE NEOCORTICAL ORGANOIDS TO MODEL THE IMPACT OF CIS-REGULATORY VARIATION ON CORTICAL NEUROGENESIS ACROSS EVOLUTIONARY TIMESCALES (scATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	RDS	Daniel Medina Cano	Oct 20, 2024
GSE276282	Single-nuclear multiome (RNA & ATAC) profiling of Pax3-Cre lineage traced endothelium from E9.5 mouse embryos and bulk ATAC-seq from E13.5 mouse embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	RDS	Oliver Andrew Stone	Oct 19, 2024
GSE278419	RUNX2 promotes pulmonary fibrosis through the conversion of alveolar fibroblasts into pathological fibroblasts	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	H5 RDS	Le Xu	Nov 25, 2024
GSE191064	Single-cell chromatin accessibility and lipid profiling reveals SCD1-dependent metabolic shift in adipocytes induced by bariatric surgery	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED RDS TXT	Paul D. Soloway	Dec 20, 2021
GSE173811	Targeting P300/CBP reveals discrete regulation of transcription and chromatin accessibility by histone acetylation [singlecellseq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED RDS SRA Run Selector	Simon J Hogg	May 11, 2021
GSE192567	Single cell transcriptomic and chromatin profiles suggest Layer Vb is the only layer with shared excitatory cell types in the medial and lateral entorhinal cortex	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV RDS SNAP	Stefan Blankvoort	Dec 28, 2021
GSE193238	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE193240	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq II]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE240973	A Human Post-Implantation Embryoid Model Derived Ex Utero Solely from Genetically Unmodified Naïve PSCs (Multiome ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	RDS	Noa Novershtern	Aug 16, 2023
GSE260504	ATAC-seq of TNF-alpha activation in HEK cells with or without TRAFTAC against NfkB	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW NARROWPEAK RDS	Pierre-Luc Germain	Mar 04, 2024
GSE264098	CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BROADPEAK BW RDS	Dalia Hassan	Apr 16, 2024