GEO Browser - GEO

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46 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			SF
GSE102807	ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	58	BED BW CEL NARROWPEAK SF WIG	David Aaron Schoenfeld	Aug 14, 2018
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE140177	Integrated Genomic Analysis Reveals Key Features of Long Undecoded Transcript Isoform (LUTI)-based Gene Repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	72	BW CSV FA GFF NARROWPEAK SF TXT SRA Run Selector	Amy Moreda Tresenrider	Nov 01, 2020
GSE166179	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	1185	CSV H5 SF WIG	Eneritz Agirre	May 21, 2021
GSE168178	Clearance of chronic hepatitis C virus infection leaves scars on the epigenome driven by an interferon response and creates targetable vulnerabilities [seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	52	BED SF SRA Run Selector	Keith D Robertson	Sep 23, 2021
GSE168186	Hepatitis C virus scarring of the epigenome and creates targetable vulnerabilities following viral clearance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	83	BED IDAT SF	Keith D Robertson	Sep 23, 2021
GSE169519	Direct neuronal reprogramming by temporal identity factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BIGWIG H5 LOOM SF TSV TXT SRA Run Selector	Awais Javed	May 04, 2023
GSE179393	PRDM16 Is a Compact Myocardium-Enriched Transcription Factor Required to Maintain Compact Myocardial Cardiomyocyte Identity in Left Ventricle	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	44	SF TAR TIFF	Ju Chen	Dec 20, 2021
GSE180586	BAF60c Prevents Abdominal Aortic Aneurysms Formation through Maintaining Vascular Smooth Muscle Cell Homeostasis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	22	BIGWIG SF	Guizhen Zhao	Sep 23, 2022
GSE182888	JMJD6-DGAT1 Signaling Regulates Lipid Metabolism and Tumorigenesis in ccRCC	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BW NARROWPEAK SF SRA Run Selector	Austin J Hepperla	Jun 27, 2022
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE185334	The transcription factor Cdx2 regulates inflammasome activity through expression of the NLRP3 suppressor TRIM31 to maintain intestinal homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	NARROWPEAK SF TXT SRA Run Selector	Sanzida Jahan	Apr 25, 2023
GSE185345	Defining the Transcriptional and Epigenetic Basis of Organotypic Endothelial Diversity in the Developing and Adult Mouse	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	125	BW MTX SF TSV TXT SRA Run Selector	Manuel Eliezer Cantu Gutierrez	Jul 01, 2022
GSE185956	Glioblastoma Stem Cells Reprogram Chromatin In Vivo To Generate Selective Therapeutic Dependencies	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	BW SF	Deobrat Dixit	Oct 17, 2021
GSE186833	RNA-Seq and CUT&Tag of satellite stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BW SF TAR	Jeffrey Dilworth	Aug 04, 2022
GSE186942	ETV6 Deficiency Unlocks ERG-Dependent Microsatellite Enhancers to Drive Aberrant Gene Activation in B-Lymphoblastic Leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	97	BW SF	Russell James Hubbard Ryan	Oct 22, 2022
GSE187366	Vocal learning-associated convergent evolution in mammalian regulatory elements and proteins	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rousettus aegyptiacus	32	BIGWIG NARROWPEAK SF SRA Run Selector	Morgan Wirthlin	May 24, 2022
GSE187565	Defining the Transcriptional and Epigenetic Basis of Organotypic Endothelial Diversity in the Developing and Adult Mouse II	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BW SF XLS SRA Run Selector	Manuel Eliezer Cantu Gutierrez	May 01, 2022
GSE189590	Ikaros family proteins redundantly regulate temporal patterning in the developing mouse retina	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED BIGWIG SF TXT	Awais Javed	Dec 22, 2022
GSE190267	Proteasome-dependent truncation of the negative heterochromatin regulator Epe1 mediates antifungal resistance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	30	BEDGRAPH SF TXT SRA Run Selector	Robin Allshire	May 04, 2022