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15423 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE140049	Non-canonical base modifications of bacterial origin in a eukaryotic genome [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Adineta vaga	8	BED SRA Run Selector	Irina Arkhipova	Jan 07, 2022
GSE162150	Updated and validated global cis-regulatory element map which includes the M/m sex-determining region of Aedes aegypti	Genome binding/occupancy profiling by high throughput sequencing	Aedes aegypti	3	NARROWPEAK SRA Run Selector	Ronald J Nowling	Nov 26, 2020
GSE182881	Conformation and dynamic interactions of the multipartite genome in Agrobacterium tumefaciens	Genome binding/occupancy profiling by high throughput sequencing Other	Agrobacterium tumefaciens	42	CSV TXT SRA Run Selector	Xindan Wang	Jan 30, 2022
GSE79645	Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity	Genome binding/occupancy profiling by high throughput sequencing	Amphimedon queenslandica	20	BED BW SRA Run Selector	Federico Gaiti	Mar 31, 2017
GSE111068	Early metazoan cell type diversity and the evolution of multicellular gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Trichoplax adhaerens	10	BW TXT SRA Run Selector	Arnau Sebe-Pedros	Jul 05, 2018
GSE124016	Convergent evolution of a vertebrate-like methylome in a marine sponge	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Amphimedon queenslandica Mnemiopsis leidyi Nematostella vectensis Sycon ciliatum	36	CGMAP TXT SRA Run Selector	Alex de Mendoza	Aug 02, 2019
GSE51865	ChIP analysis unravels an exceptionally wide distribution of binding sites for the NtcA transcription factor in a heterocyst-forming cyanobacterium.	Genome binding/occupancy profiling by high throughput sequencing	Anabaena	2	BED TXT SRA Run Selector	Silvia Picossi	Jan 28, 2014
GSE64055	Identifying active cis-regulatory elements during the development of the limbs and external genitalia in the mouse and lizard.	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Mus musculus	21	BED BW SRA Run Selector	Carlos Rafael Infante	Oct 01, 2015
GSE104457	PITX1 Promotes Chondrogenesis and Myogenesis in Mouse Hindlimbs Through Conserved Regulatory Targets [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis	3	BW SRA Run Selector	Jialiang Wang	Feb 14, 2018
GSE59773	Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anopheles gambiae	5	BED FPKM_TRACKING GTF WIG SRA Run Selector	Elena Gómez-Díaz	Sep 04, 2014
GSE120076	Chromatin changes induced by a Plasmodium falciparum infection in Anopheles gambiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anopheles gambiae	14	BW TXT SRA Run Selector	Jose Luis Ruiz Rodriguez	Jan 08, 2019
GSE152924	The regulatory genome of the malaria vector Anopheles gambiae: integrating chromatin accessibility and gene expression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Anopheles gambiae	12	BW XLSX SRA Run Selector	Jose Luis Ruiz Rodriguez	Dec 22, 2020
GSE153778	Two distinct mechanisms for X chromosome dosage compensation in Anopheles and Drosophila [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Anopheles gambiae	12	BW SRA Run Selector	Asifa Akhtar	May 31, 2021
GSE185816	Comparative ATACseq Between Killifish Species	Genome binding/occupancy profiling by high throughput sequencing	Aphyosemion australe Austrofundulus limnaeus Iconisemion striatum Nothobranchius furzeri	30	TXT SRA Run Selector	Anne Brunet	Jun 17, 2024
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE71847	Evolution of insect hindwing morphology: A comparative genomic analysis of targets of Hox protein Ultrabithorax	Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera	12	TXT SRA Run Selector	Naveen Prasad	Aug 31, 2016
GSE85877	Transcriptomic and epigenetic responses to social challenge and their association with future behavior in honey bees (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera	8	BIGWIG TXT SRA Run Selector	Michael C. Saul	Mar 29, 2017
GSE110640	Queen and worker honeybee castes are defined by alternative chromatin states during larval development. [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera	14	TXT SRA Run Selector	Robert Lowe	Jul 27, 2018
GSE113131	Honey bee neurogenomic responses to affiliative and agonistic social interactions.	Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera	8	BIGWIG TXT SRA Run Selector	Michael C. Saul	Nov 29, 2018
GSE120560	Phenotypic plasticity shapes genome architecture in the honeybee Apis mellifera (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera	9	BED SRA Run Selector	Peter Kenneth Dearden	Sep 17, 2019