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15388 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE158435	Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16491	BED BW TXT SRA Run Selector	Haiqing Xiong	Mar 05, 2021
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE140493	Multi-omic profiling of single nuclei uncovers regulatory diversity of brain cell types and diseases	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	8494	CSV HDF5 TSV SRA Run Selector	Joseph R Ecker	Dec 12, 2019
GSE173679	Orchestrating endothelial cell fate regulation and function during multiple organs’ development, stress and aging at single cell resolution	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4059	BED SRA Run Selector	Yaxi Liu	Apr 30, 2024
GSE129327	CoBATCH for high-throughput single-cell epigenomic profiling [EC_CoBATCH]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3057	BED SRA Run Selector	Haiqing Xiong	Jul 15, 2019
GSE96769	Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2784	BED TXT SRA Run Selector	Jason Daniel Buenrostro	Apr 26, 2018
GSE212830	Epigenetic landscape of Human Brains by Single Nucleus DNA Methylation and Chromatin Conformation Profiling - pool131_h1930004_Pul	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2771	TSV SRA Run Selector	Joseph R Ecker	Jul 05, 2023
GSE126572	Profiling chromatin state by single-cell itChIP-seq [ESC_EpiLC]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2592	BED SRA Run Selector	Chen Li	Jul 11, 2019
GSE112050	Indispensable epigenetic control of thymic epithelial cell development and function by Polycomb Repressive Complex 2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2343	BW TXT SRA Run Selector	Adam Handel	Feb 19, 2021
GSE129328	CoBATCH for high-throughput single-cell epigenomic profiling [native ESC coBATCH]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2161	BED SRA Run Selector	Haiqing Xiong	Jul 15, 2019
GSE166715	Development of Double-positive Thymocytes at Single-cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1989	TXT SRA Run Selector	Kun Qu	Feb 13, 2021
GSE128072	Genetic and Epigenetic Fine Mapping of Complex Trait Associated Loci in the Human Liver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1794	TXT SRA Run Selector	Minal Caliskan	Jun 13, 2019
GSE151287	Screening of PCRP transcription factor antibodies in biochemical assays	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1666	SRA Run Selector	B. Franklin Pugh	Jun 09, 2020
GSE65360	Single-cell chromatin accessibility data using scATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	1632	BED SRA Run Selector	Jason Daniel Buenrostro	Jun 17, 2015
GSE146128	Functional Dissection of Transcription Factor Networks Governing Haematopoietic Progenitor States	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1520	BED BW CSV SRA Run Selector	Bertie Gottgens	Oct 26, 2020
GSE156017	Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1432	TXT SRA Run Selector	Keji Zhao	Dec 14, 2020
GSE107816	Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling [single cell]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1344	CSV SRA Run Selector	Ansuman Satpathy	Jan 15, 2018
GSE147927	A high-resolution protein architecture of the budding yeast genome	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	1251	BED BW SRA Run Selector	B. Franklin Pugh	Jan 13, 2021
GSE176418	Regulatory programs of B-cell activation and germinal center reaction allow for B-ALL escape from CD19 CAR T-cell therapy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	973	CSV SRA Run Selector	Birgit Knoechel	Jun 09, 2022
GSE129119	CUT&Tag for efficient epigenomic profiling of small samples and single cells (965 single cells)	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	965	BED SRA Run Selector	Jorja Henikoff	Apr 29, 2019