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480 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TDF
GSE79259	The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	BED TDF WIG XLS SRA Run Selector	Jinkui Cheng	Apr 26, 2016
GSE79738	Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BED TDF XLS SRA Run Selector	Jinkui Cheng	May 28, 2016
GSE89320	A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BEDGRAPH TDF WIG	Jian-Kang Zhu	Dec 29, 2016
GSE107750	H2A.Z ChIP-seq of WT, ros1-14, idm1-9, arp6-4 and pie1-6	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	TDF SRA Run Selector	Huang Huan	Dec 06, 2020
GSE108487	Genome-wide profilings of EDM2-mediated effects on H3K9me2 and transcripts in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BED TDF SRA Run Selector	Xueqing Maggie Lu	Aug 03, 2020
GSE159988	Genome-wide maps of H3K27me3 states in Arabidopsis thaliana flowers.	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	TDF SRA Run Selector	Ralf Mueller-Xing	Oct 23, 2022
GSE165877	Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	42	BW TDF TSV WIG SRA Run Selector	Cheng Zhao	Aug 11, 2021
GSE185388	ChIP-seq of a transcriptional regulator AtSDR4L	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	NARROWPEAK TDF TXT SRA Run Selector	Liang Song	Sep 21, 2022
GSE205208	PIF7 is the master regulator of thermomorphogenesis in shade [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	TDF XLSX	Yogev Burko	Jul 26, 2022
GSE205210	PIF7 is the master regulator of thermomorphogenesis in shade	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	42	TDF	Yogev Burko	Jul 26, 2022
GSE246997	AtSDR4L and DIG1 interact with VAL2 to promote seed-to-seedling transition	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	18	BROADPEAK NARROWPEAK TDF	Liang Song	Apr 23, 2024
GSE119293	Binding profile of the bZIP transcription factor, ATF-7, in C. elegans on pathogenic Pseudomonas aeruginosa	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	14	NARROWPEAK TDF WIG SRA Run Selector	Dennis Kim	Feb 01, 2019
GSE119294	C. elegans on pathogenic Pseudomonas aeruginosa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	31	TDF WIG	Dennis Kim	Feb 01, 2019
GSE62690	N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Chlamydomonas reinhardtii	14	TDF SRA Run Selector	Guan-Zheng Luo	Apr 30, 2015
GSE40629	Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	2	TDF SRA Run Selector	Håvard Aanes	Nov 01, 2012
GSE67648	Genome-wide analysis of Smad2 and FoxH1 binding sites in zebrafish blastula	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	TDF SRA Run Selector	Julien Dubrulle	Apr 08, 2015
GSE96928	H3K27me3 deposition over sarcomeric and cytoskeletal promoters is required for cardiomyocyte cytokinesis and wound invasion during zebrafish heart regeneration [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	13	CSV TDF SRA Run Selector	Raz Ben-Yair	Sep 17, 2019
GSE96930	H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	19	TDF	Raz Ben-Yair	Sep 17, 2019
GSE113086	Developmental regulation of heterochromatin establishment at the maternal to zygotic transition	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	20	TDF SRA Run Selector	Mary Goll	Feb 26, 2019
GSE60104	Global ChIP-seq Normalization Reveals Epigenome Modulations	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	48	TDF SRA Run Selector	Eric Olson	Oct 30, 2014