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1676 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TSV
GSE206995	Chromatin Accessibility-Based Characterization of the Gene Regulatory Networks Underpinning Phenotypic Plasticity in the Honey Bee	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera	39	NARROWPEAK TSV	Paul Hurd	Nov 09, 2022
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE87421	Arabidopsis thaliana sixth generation of mutant fas2 MNase-seq	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TSV SRA Run Selector	Angel Barco	Nov 13, 2017
GSE93024	TET-mediated epimutagenesis of the Arabidopsis thaliana methylome	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BED TSV TXT SRA Run Selector	Robert J Schmitz	Mar 02, 2018
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39	BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE120669	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	44	TSV	Michael Borg	Mar 17, 2020
GSE122314	Epigenetic Control of a Multifunctional Stress Regulator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	126	TSV TXT SRA Run Selector	Joseph R Ecker	Aug 19, 2019
GSE139296	PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	109	BW TSV TXT SRA Run Selector	Joseph R Ecker	Apr 30, 2021
GSE142613	Photoperiod-mediated Chromatin Accessibility in the Single Cell Types of Leaf Phloem and Epidermis in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	BED BW TSV SRA Run Selector	Liangyu Liu	Dec 09, 2020
GSE146948	The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	63	BW TSV TXT SRA Run Selector	Colette L Picard	Mar 26, 2021
GSE150436	The chromatin remodeler DDM1 silences transposons through deposition of the histone variant H2A.W	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	43	BW TSV	Bhagyshree Babasaheb Jamge	Feb 10, 2021
GSE155304	Single cell level analysis of the Arabidopsis root transcriptome and chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	9	RDS TAR TSV TXT SRA Run Selector	Andrew D Farmer	Jan 11, 2021
GSE155369	Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	TSV	Michael Borg	Jan 26, 2021
GSE165877	Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	42	BW TDF TSV WIG SRA Run Selector	Cheng Zhao	Aug 11, 2021
GSE235494	Multiome in the same cell revealed the impact of osmotic stress on Arabidopsis root tip development at single-cell level [ATAC]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED MTX TSV	Qing LIU	Apr 25, 2024
GSE235510	Multiome in the same cell revealed the impact of osmotic stress on Arabidopsis root tip development at single-cell level	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	BED BW MTX TSV XLS	Qing LIU	Apr 25, 2024
GSE236290	MBD2 couples DNA methylation to Transposable Elements silencing during male gametogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	146	BED BW MTX NARROWPEAK TSV TXT WIG	Shuya Wang	Jan 12, 2024
GSE250330	Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	8	BED BW TSV	Julia I. Qüesta	Feb 01, 2024
GSE248452	ATAC-sequencing of Artemia cyst in in diapause stage and 5 hours after embryonic diapause termination	Genome binding/occupancy profiling by high throughput sequencing	Artemia parthenogenetic lineage	6	TSV	Tong Hao	May 01, 2024
GSE206874	Nuclear functions of KaeA, the subunit of KEOPS complex in Aspergillus nidulans	Genome binding/occupancy profiling by high throughput sequencing	Aspergillus nidulans	6	BED FASTA TSV TXT	Agnieszka Dzikowska	Oct 28, 2022