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1728 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			TSV
GSE160313	In vivo CRISPR screening reveals nutrient signaling processes underpinning CD8+ T cell fate decisions [Pofut1 ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	TSV SRA Run Selector	Hongbo Chi	Feb 25, 2021
GSE210736	Chronic hypoxia remodels the tumor microenvironment to support glioma stem cell growth [scRNAseq+Multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	39	H5 MTX TSV TXT XLSX	James Nicholson	Apr 03, 2024
GSE237938	10X Multiome AKSP	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	MTX TSV	BiNGS Core	Oct 17, 2024
GSE195611	3D chromatin architecture of drug-tolerant cancer cells at single-cell resolution	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	410	MTX TSV TXT	Yufan Zhou	Aug 14, 2024
GSE280728	3D chromatin hubs as regulatory units of identity and survival in acute T-cell leukemia [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	BED MTX TSV	Javier Rodriguez Hernaez	Nov 04, 2024
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE36106	4-7 Hour ORC ChIP-Seq experiment	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	4	BEDGRAPH TSV SRA Run Selector	DCC modENCODE	Feb 27, 2012
GSE36107	4-7 Hour PolII ChIP-Seq experiment	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	4	BEDGRAPH TSV SRA Run Selector	DCC modENCODE	Feb 27, 2012
GSE226467	5-formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Xenopus tropicalis	32	BW TSV	Emil Karaulanov	Aug 29, 2024
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE207565	A Bipartate function of ESRRB integrates signaling over time to balance self-renewal and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BW TSV	Josh M Brickman	Apr 18, 2023
GSE225554	A Cellular Atlas of the Down Syndrome Brain Identifies Accelerated Oligodendrocyte Precursor Cell Senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	H5 MTX TBI TSV	Brian Kalish	Sep 14, 2023
GSE159044	A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Cricetulus griseus	72	BED BEDGRAPH TSV SRA Run Selector	Nathan E Lewis	Oct 06, 2020
GSE133417	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BW MTX NARROWPEAK TSV	Caleb Lareau	Dec 31, 2021
GSE133404	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [G1E_ATACseq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED TSV SRA Run Selector	Caleb Lareau	Dec 31, 2021
GSE133409	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [G1E_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED BW NARROWPEAK TSV SRA Run Selector	Caleb Lareau	Dec 31, 2021
GSE155255	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [Patient scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	TSV SRA Run Selector	Caleb Lareau	Dec 31, 2021
GSE213020	A Cre-deleter specific for embryo-derived brain macrophages reveals distinct features of microglia and border macrophages	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	H5 TSV	Julia Belk	Feb 02, 2023
GSE212002	A Critical Role of RUNX1 in Governing Megakaryocyte-Primed Hematopoietic Stem Cell Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	120	BW MTX TSV TXT	Chen Wang	Jan 20, 2023