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30 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			VCF
GSE52457	Global Reorganization of Chromatin Architecture during Embronic Stem Cell Differentiation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	27	BEDGRAPH VCF XLS SRA Run Selector	Jesse R Dixon	Feb 18, 2015
GSE59836	Recombination initiation maps of individual human genomes	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	15	BED TXT VCF SRA Run Selector	Kevin Brick	Nov 17, 2014
GSE73833	Humanized PRDM9 Mouse Testis H3K4me3 and DMC1 ChIP-seq	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Third-party reanalysis	Mus musculus	18	TXT VCF SRA Run Selector	Nicolas Altemose	Feb 02, 2016
GSE79569	Allele-specific binding analysis of rs242561 by NRF2 ChIP tagmentation sequencing	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	VCF SRA Run Selector	Xuting Wang	Apr 14, 2016
GSE97577	Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	9	BW CSV VCF SRA Run Selector	Liang Liu	Apr 11, 2017
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE99956	Loss of G9a preserves mutation patterns but increases chromatin accessibility, genomic instability and aggressiveness in skin tumours	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Mus musculus	75	BEDGRAPH CEL VCF	Aikaterini Symeonidi	Nov 13, 2018
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE126319	Variant and cell-context specific H3K27M reprogramming results in distinct enhancer architecture and oncogenic states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	155	BW CSV VCF XLSX SRA Run Selector	Michelle Monje	Oct 03, 2019
GSE128932	Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	48	BEDGRAPH BW TXT VCF SRA Run Selector	Robert A Martienssen	Mar 13, 2020
GSE144833	Increased fitness of pancreatic cancer cells Adapted to nutrient deprivation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	24	BW TXT VCF SRA Run Selector	Nada Y Kalaany	Feb 01, 2021
GSE148185	Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	275	BEDGRAPH BIGWIG TXT VCF	Gustavo Agustín Ruiz Buendía	Apr 07, 2020
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20	BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE152640	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	36	BW IDAT VCF	Peter A Jones	Jun 17, 2020
GSE158474	Genetically defined syngeneic mouse models of ovarian cancer as tools for the discovery of combination immunotherapy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	MTX TSV VCF	Sonia Iyer	Nov 17, 2020
GSE158506	Fat1 deletion promotes hybrid EMT state with enhanced tumor progression, stemness, and metastasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BEDGRAPH TXT VCF	Yura Song	Dec 04, 2020
GSE164716	H3K27me3 conditions chemotolerance in triple-negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BW MTX TBI TSV VCF	Céline Vallot	Feb 15, 2022
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE173689	Detect-seq on transfected HEK293T cells [ATAC-seq data and in situ ChIP-seq data]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BIGWIG VCF SRA Run Selector	Howard MENG	Apr 22, 2022