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4852 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BW
GSE217745	Aberrant accumulation of Kras-dependent pervasive transcripts during tumor progression renders cancer cells dependent on PAF1 expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BW	Xiangzheng Liu	Nov 01, 2023
GSE242201	DNA methylation shapes the Polycomb landscape during the exit from naive pluripotency	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	39	BW	Julien Richard Albert	Jul 16, 2024
GSE229127	H3.3B controls aortic dissection progression by regulating vascular smooth muscle cells phenotypic transition and vascular inflammation.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BW	li wang	Apr 06, 2024
GSE99154	H3K36me3 protects the mouse epigenome from single nucleotide variations [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW SRA Run Selector	Jin Sun	Aug 01, 2019
GSE230233	Pre-Hypertrophic Chondrogenic Enhancer Landscape of Limb and Axial Skeleton Development [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BW	Guillaume Andrey	May 11, 2023
GSE230234	Pre-Hypertrophic Chondrogenic Enhancer Landscape of Limb and Axial Skeleton Development [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW NARROWPEAK	Guillaume Andrey	May 11, 2023
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE222057	(ATAC-seq_and_ChIP-seq) Spic regulates one-carbon metabolism and histone methylation in ground-state pluripotency	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BW TXT XLSX	Yaser Atlasi	Sep 06, 2023
GSE118440	2-hydroxyglutarate inhibits transcription factor mediated differentiation by preventing H3K9 demethylation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	BW SRA Run Selector	Richard Koche	Jun 10, 2019
GSE185619	2cChIP-seq: an efficient and reliable method for epigenomic profiling of small cell numbers and single cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	231	BW TXT	Xiaodong Zhao	Oct 27, 2024
GSE173281	2cChIP-seq: an efficient and reliable method for epigenomic profiling of small cell numbers and single cells [2cChIP-seq and 2cMeDIP-seq]	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	34	BW SRA Run Selector	Xiaodong Zhao	Oct 27, 2024
GSE165509	2cChIP-seq: an efficient and reliable method for epigenomic profiling of small cell numbers and single cells [single-cell 2cChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	192	BW SRA Run Selector	Xiaodong Zhao	Oct 27, 2024
GSE126112	3D ATAC-PALM: Super-resolution Imaging of the Accessible Genome	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	14	BW HIC MCOOL TXT SRA Run Selector	Robert Tjian	Jan 29, 2020
GSE126014	3D Chromosome Structure Can Reveal Stem Cell Signatures	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	21	BW TXT	Ji Wu	Jan 20, 2022
GSE126010	3D Chromosome Structure Can Reveal Stem Cell Signatures (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BW SRA Run Selector	Ji Wu	Jan 20, 2022
GSE227750	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	150	BW MTX TXT	Yunshun Chen	Sep 08, 2023
GSE228917	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_ATAC]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BW	Gordon K Smyth	Sep 08, 2023
GSE228925	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_CUT&Tag]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	66	BW	Gordon K Smyth	Sep 08, 2023
GSE228944	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_ATAC]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BW	Gordon K Smyth	Sep 08, 2023
GSE228950	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_CUT&Tag]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44	BW	Gordon K Smyth	Sep 08, 2023