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4833 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BW
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis Ornithorhynchus anatinus Mus musculus Monodelphis domestica Homo sapiens Gallus gallus Anolis carolinensis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE87872	Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	48	BW TXT SRA Run Selector	Charles Bradshaw	Jun 12, 2017
GSE278272	Targeted DamID Detects Cell Type Specific Histone Modifications in intact tissues or organisms	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus Drosophila melanogaster	47	BW	Andrea Brand	Oct 23, 2024
GSE202585	Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Mus musculus	38	BW	Ioanna Tiniakou	Apr 12, 2024
GSE106578	Nucleosome profiles for mammalian tissues [Mnase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Tupaia belangeri Sus scrofa Mus musculus Macaca mulatta Homo sapiens	21	BW SRA Run Selector	Yumei Li	Aug 07, 2018
GSE106580	Nucleosome profiles for mammalian tissues	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Tupaia belangeri Sus scrofa Mus musculus Macaca mulatta Homo sapiens	39	BW	Yumei Li	Aug 06, 2018
GSE120589	The mole genome reveals regulatory rearrangements associated with adaptive intersexuality	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Talpa occidentalis Mus musculus	70	BEDGRAPH BW HIC	Francisca Martinez Real	Oct 09, 2020
GSE219021	Co-option of the transcription factor SALL1 in mole ovotestis formation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Talpa occidentalis Mus musculus	32	BW	Francisca Martinez Real	Dec 04, 2022
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Synthetic plasmid Saccharomyces cerevisiae Mus musculus	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015
GSE194018	A role for the GATA transcription factor family in X-chromosome inactivation as direct potent Xist activators	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Synthetic plasmid Mus musculus	39	BW NARROWPEAK	Till Schwämmle	Jan 26, 2022
GSE144454	A genome wide screening for effectors of chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	75	BW	Yusuke Miyanari	May 01, 2022
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE167358	Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus	Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Mus musculus	164	BW HIC NARROWPEAK	Till Schwämmle	Mar 04, 2021
GSE215065	Regulation of mouse chamber selective enhancers	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	synthetic construct Mus musculus	82	BW TXT	Xiaoran Zhang	Jan 30, 2023
GSE218472	Enhancer grammar of liver cell types and hepatocyte zonation states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	79	BW TSV	Carmen Bravo Gonzalez-Blas	Sep 07, 2023
GSE241708	Genomic context sensitizes regulatory elements to genetic disruption	Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus	154	BW TXT	Matthew T Maurano	Mar 13, 2024
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa domesticus Mus musculus Homo sapiens Equus caballus Danio rerio Canis lupus familiaris	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE132146	Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa Mus musculus Homo sapiens	202	BW H5	Silvia C Hernandez	Sep 29, 2020
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa Rattus norvegicus Mus musculus Bos taurus	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE188588	Hierarchical accumulation of histone variant H2A.Z regulates transcriptional states and histone modifications in early mammalian embryos [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa Mus musculus	62	BW SRA Run Selector	Jing-Jing Zhang	Jun 24, 2022