GEO Browser - GEO

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32 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		GTF
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE62486	T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation	Expression profiling by high throughput sequencing Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	143	BED GTF TXT	Richard Jenner	Jun 08, 2016
GSE63782	Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	103	BED BW GTF TSV SRA Run Selector	Philipp Rathert	Sep 08, 2015
GSE67755	Chronic haloperidol effects on gene expression and chromatin accessibility in mouse brain	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Mus musculus	87	BED BW CEL GTF	Yunjung Kim	Apr 10, 2016
GSE70766	Distinct processes and transcriptional targets underlie CDX2 requirements in intestinal stem cells and differentiated villus cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BED BW GTF TXT SRA Run Selector	Ramesh Shivdasani	Sep 15, 2015
GSE148193	Investigation into SATB2 DNA-binding sites and the effect of SATB2 removal on the transcriptome of skeletal muscle satellite cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BW GTF SRA Run Selector	Marjorie Brand	Apr 06, 2023
GSE173652	Asymmetrical forward and reverse developmental trajectories determine molecular programs of B cell antigen receptor editing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	77	BED BW GTF TXT SRA Run Selector	Mark Maienschein-Cline	Jul 06, 2022
GSE178556	Wdr5	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	43	BED BIGWIG BW GTF NARROWPEAK	Rajesh C Rao	Jun 22, 2021
GSE178673	Chromatin landscape in perinatal cardiomyocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	28	BED BW GTF HIC SRA Run Selector	Zhang Jing	Feb 03, 2023
GSE221034	Bulk Omni-ATAC-seq in young (2 months) and aged (22-24 months) mice across 23 cell-types	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	166	BED BW GTF NARROWPEAK TXT	Christian Nefzger	Jul 15, 2024
GSE140361	DOT1L inhibitors block abnormal self-renewal induced by cohesin loss	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	BIGWIG GTF	Katelyn Elizabeth Heimbruch	Feb 25, 2021
GSE104686	N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	35	BROADPEAK GTF TXT SRA Run Selector	Yue Li	Nov 21, 2017
GSE146729	TAK-418-418, a LSD1 inhibitor, can rescue the genome wide chromatin abnormality in hippocapmus tissue in KMT2D+/bGeo mice after 2 week treatment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	45	BROADPEAK GTF	Li Zhang	Mar 11, 2020
GSE47085	Scl specifies hemogenic endothelium and inhibits cardiogenesis via primed enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array Methylation profiling by high throughput sequencing	Mus musculus	47	BW CEL GTF	Tõnis Org	Jan 01, 2015
GSE140877	Nucleosome organization dynamics during fertilization reveals regulation factors of zygotic gene activation in mouse	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	180	BW GTF	Shaorong Gao	Apr 02, 2022
GSE174774	Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	64	BW GTF SRA Run Selector	Le Xiong	Jun 30, 2021
GSE178096	Genetic-epigenetic interactions in paternal transgenerational inheritance of metabolic disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	75	BW GTF SRA Run Selector	Anne-Sophie Pépin	Mar 30, 2022
GSE189599	Identification and characterization of BEND2 as a novel and key regulator of meiosis during mouse spermatogenesis	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	40	BW GTF	Chunsheng Han	Jun 01, 2022
GSE201577	ATAC-seq data in MEF and mESC sequenced by BGI DNBSEQ-G400 platform and Illumina HiseqX10 instruments	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BW GTF NARROWPEAK TXT	Christian Nefzger	Jul 27, 2022