GEO Browser - GEO

Series

Samples

Platforms

DataSets

124 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TBI
GSE199739	NuRD complex recruitment to Thpok mediates CD4+ T cell lineage differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BAI CSV H5 TBI TSV	Remy Bosselut	Jun 10, 2022
GSE123576	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [mouse brain]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE141825	Single-cell ATAC-seq of mouse thymus iNKT cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Indra Adrianto	Jun 27, 2023
GSE142365	Single cell ATAC-seq of cardiomyocytes from neonatal mouse hearts after injury	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED CSV H5 MTX TBI TSV SRA Run Selector	Zhaoning Wang	Mar 18, 2020
GSE142366	Dynamic transcriptional responses to injury of regenerative and non-regenerative cardiomyocytes revealed by single-nucleus RNA sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	18	BED CSV H5 MTX TBI TSV	Zhaoning Wang	Mar 18, 2020
GSE149622	Skin-resident innate lymphoid cells converge on a pathogenic effector state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED FA MTX TBI TSV SRA Run Selector	Elena Torlai Triglia	Dec 14, 2020
GSE153479	Single cell ATAC-seq of neonatal heart regeneration	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Zhaoning Wang	Dec 08, 2020
GSE158196	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 TBI TSV SRA Run Selector	Danielle R. Little	Mar 08, 2021
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE162798	Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED CSV MTX TBI TSV TXT SRA Run Selector	Anil K Sood	Oct 20, 2021
GSE181557	Kidney cell type specific changes in the chromatin and transcriptome landscapes following epithelial Hdac1 and Hdac2 knockdown	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CSV H5 TBI TSV SRA Run Selector	Kelly Anne Hyndman	Dec 27, 2021
GSE183310	Decoding the PITX2 controlled genetic network in atrial fibrillation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Jeffrey D. Steimle	Apr 28, 2022
GSE189210	Parallel single cell multi-omics analysis of neonatal skin reveals transitional fibroblast states that restrict differentiation into distinct fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 MTX TBI TSV SRA Run Selector	Sean Thompson	Nov 24, 2021
GSE190054	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED MTX TBI TSV TXT SRA Run Selector	CBDM Lab	Dec 07, 2021
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021
GSE194226	Single cell ATAC-seq of mouse retinal CX3CR1+ myeloid cells for Naive, PBS and 4xLPS treatment	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED CSV MTX TBI TSV	Mike Sapieha	Feb 22, 2023
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED CSV H5 HIC MTX TBI TSV XLSX	Vittorio Sartorelli	Jul 31, 2022
GSE199556	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE199557	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE210938	Single cell ATAC-seq analysis of the kidney in a murine endotoxemia model	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CLOUPE H5 TBI TSV	Takashi Hato	Aug 17, 2022