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859 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TSV
GSE240583	Baf155 establishes chromatin priming to promote hematopoietic regeneration and function [single cell multiome - ATAC + GEX]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	ARROW MTX RDS TSV	Changxu Fan	Jul 09, 2024
GSE240585	Baf155 controls hematopoietic differentiation and regeneration through chromatin priming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	ARROW BW MTX TSV	Changxu Fan	Jul 08, 2024
GSE199739	NuRD complex recruitment to Thpok mediates CD4+ T cell lineage differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BAI CSV H5 TBI TSV	Remy Bosselut	Jun 10, 2022
GSE205368	s3-ATAC landscape of GEMM AML-derived CD8 T cells treated in vivo with JQ1 or vehicle	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BAM TSV	Andrew Adey	Jun 05, 2022
GSE146292	Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BB BED BIGWIG H5 MTX NARROWPEAK TSV SRA Run Selector	Tiago Castro	Jan 04, 2021
GSE35213	T-cell factor 4 and β-catenin chromatin occupancies pattern zonal liver metabolism.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED TSV SRA Run Selector	Philippe Veber	Jan 18, 2014
GSE39502	Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED PDF TSV WIG SRA Run Selector	Sebastien Vigneau	Oct 11, 2013
GSE39523	Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED TSV WIG	Sebastien Vigneau	Oct 11, 2013
GSE42132	ChIP-seq analysis of Gli1 and Sox2 input to neural progenitor program and integration with actve histone marks	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED TSV SRA Run Selector	Kevin Peterson	Dec 15, 2012
GSE42594	cis-Regulation of Shh-directed neural pattering	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	16	BED CEL TSV	Kevin Peterson	Dec 15, 2012
GSE45282	Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Non-coding RNA profiling by array	Mus musculus	32	BED CALLS PAIR TSV	Abhinav Nellore	Apr 11, 2013
GSE47819	Epigenetic and genetic changes during mouse hematopoietic stem cell aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	37	BED TSV	deqiang sun	Apr 30, 2014
GSE50793	Role of de novo DNA methyltransferases in hematopoietic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	BED TSV	deqiang sun	Aug 19, 2014
GSE52397	C/EBPα poises B cells for rapid reprogramming into iPS cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	48	BED TSV TXT	Bruno Di Stefano	Nov 17, 2013
GSE52974	The 8q24 cleft lip susceptibility locus is a remote Myc enhancer required for normal face morphology	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	11	BED BW TSV TXT SRA Run Selector	Massimo Petretich	Apr 03, 2014
GSE57409	Epigenomic comparison of distinct pluripotent stem cell states reveals a new class of enhancers with roles throughout mammalian development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BIGWIG TSV TXT	Paul J. Tesar	Jun 04, 2014
GSE63782	Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	103	BED BW GTF TSV SRA Run Selector	Philipp Rathert	Sep 08, 2015
GSE66736	Tex10 Coordinates Epigenetic Control of Super-Enhancer Activity for Pluripotency and Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH TSV	Jianlong Wang	May 06, 2015
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE81045	Zfp281 Coordinates Opposite Functions of Tet1 and Tet2 for Alternative Pluripotent States	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH TSV	Jianlong Wang	Jun 28, 2016