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871 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TSV
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	155	BEDGRAPH BROADPEAK HDF5 NARROWPEAK TSV	Jop Kind	Apr 01, 2022
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE175684	HyDrop: droplet-based scATAC-seq and scRNA-seq using dissolvable hydrogel beads	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	20	BW TAR TSV SRA Run Selector	Stein Aerts	Jun 04, 2021
GSE210749	SCENIC+: identification of enhancers and gene regulatory networks using single-cell multiomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	13	TSV	Gert Hulselmans	Apr 17, 2023
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE60955	The metabolome regulates the epigenetic landscape during naïve to primed human embryonic stem cell transition	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	18	TSV TXT WIG SRA Run Selector	Hannele Ruohola-Baker	Nov 17, 2015
GSE63782	Transcriptional plasticity promotes primary and acquired resistance to BET bromodomain inhibition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	103	BED BW GTF TSV SRA Run Selector	Philipp Rathert	Sep 08, 2015
GSE67867	Competition between DNA methylation and transcription factors determines binding of NRF1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	48	BW TSV SRA Run Selector	Anais Flore Bardet	Dec 16, 2015
GSE80105	Synergistic model of chromatin predicts Dnase-I accessibility	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR TSV TXT SRA Run Selector	David Gifford	Jul 20, 2016
GSE85356	DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	285	BEDGRAPH COV TSV TXT	Jieyi Xiong	Jun 18, 2020
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE94418	Transcriptional regulation of tDNA in H9 ESCs	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens Mus musculus	13	CSV TSV TXT SRA Run Selector	keith e giles	Feb 02, 2020
GSE99521	YY1 is a structural regulator of enhancer-promoter loops	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	47	CLOUPE CSV TSV WIG	Richard A Young	Nov 16, 2017
GSE108639	Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	TSV WIG	Koos Rooijers	Apr 21, 2019
GSE123579	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [species mixture]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	5	CSV TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123581	Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	82	CSV TBI TSV	Caleb Lareau	May 02, 2019