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907 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TSV
GSE132117	Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	33	TSV	Martina Brueckner	Jun 04, 2019
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE218472	Enhancer grammar of liver cell types and hepatocyte zonation states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	79	BW TSV	Carmen Bravo Gonzalez-Blas	Sep 07, 2023
GSE256215	Aberrant homeodomain-DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models	Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus	32	BIGWIG NARROWPEAK TSV TXT	Shiming Chen	Nov 22, 2024
GSE267974	Fosl2 facilitates chromatin accessibility to determine developmental events during follicular maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa Mus musculus	48	BW MTX TSV	Yiting Guan	Jun 01, 2024
GSE142366	Dynamic transcriptional responses to injury of regenerative and non-regenerative cardiomyocytes revealed by single-nucleus RNA sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	18	BED CSV H5 MTX TBI TSV	Zhaoning Wang	Mar 18, 2020
GSE182938	Time-restricted feeding prevents deleterious metabolic effects of circadian disruption through epigenetic control of β-cell function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	62	BED BW H5 TSV	Matthew R Brown	Nov 24, 2021
GSE241561	SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	33	BIGWIG MTX NARROWPEAK RESULTS TSV	Fabian Michael Kern	Feb 23, 2024
GSE180258	Epigenetically-regulated RNA-binding proteins signify malaria hypnozoite dormancy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Plasmodium cynomolgi Mus musculus	26	BEDGRAPH BW TSV	Haoyu Wu	Jan 24, 2024
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Pan troglodytes Mus musculus Macaca mulatta Homo sapiens	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE35213	T-cell factor 4 and β-catenin chromatin occupancies pattern zonal liver metabolism.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED TSV SRA Run Selector	Philippe Veber	Jan 18, 2014
GSE39502	Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED PDF TSV WIG SRA Run Selector	Sebastien Vigneau	Oct 11, 2013
GSE39523	Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED TSV WIG	Sebastien Vigneau	Oct 11, 2013
GSE42132	ChIP-seq analysis of Gli1 and Sox2 input to neural progenitor program and integration with actve histone marks	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED TSV SRA Run Selector	Kevin Peterson	Dec 15, 2012
GSE42474	Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes [ChIP-Seq and RNA-seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	9	TSV WIG SRA Run Selector	Richard A Young	Jan 02, 2013
GSE42594	cis-Regulation of Shh-directed neural pattering	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	16	BED CEL TSV	Kevin Peterson	Dec 15, 2012
GSE44288	Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	TSV TXT WIG	Richard A Young	Feb 13, 2013
GSE45282	Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Non-coding RNA profiling by array	Mus musculus	32	BED CALLS PAIR TSV	Abhinav Nellore	Apr 11, 2013
GSE47819	Epigenetic and genetic changes during mouse hematopoietic stem cell aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	37	BED TSV	deqiang sun	Apr 30, 2014
GSE50793	Role of de novo DNA methyltransferases in hematopoietic stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	27	BED TSV	deqiang sun	Aug 19, 2014