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4464 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TXT
GSE11074	Chromatin state maps (H3K4me3 and H3K27me3) from partially and fully reprogrammed mouse cell lines	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	TXT SRA Run Selector	Tarjei S Mikkelsen	May 28, 2008
GSE11172	Genome-wide chromatin state maps of ES cells, ES-derived neural progenitor cells and brain tissue	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 06, 2008
GSE11389	Mouse Chromosome 17 Mapping in Two MEF Cell Lines	Genome binding/occupancy profiling by genome tiling array Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	39	TXT	Florian M Pauler	Nov 24, 2008
GSE11431	Mapping of transcription factor binding sites in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED TXT SRA Run Selector	Chia-Lin Wei	Jun 12, 2008
GSE11724	Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	TXT SRA Run Selector	Whitehead Institute	Jul 30, 2008
GSE12241	Genome-wide maps of chromatin state in pluripotent and lineage-committed cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 25, 2008
GSE12721	Chip-seq from MEF cells H3K27me3	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	GFF TXT WIG SRA Run Selector	Florian M Pauler	Dec 22, 2008
GSE13084	Mapping polycomb complexes in human and mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TXT SRA Run Selector	Tarjei S Mikkelsen	Nov 01, 2008
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Saccharomyces cerevisiae synthetic construct	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE13845	ChIP-seq Accurately Predicts Tissue-Specific Activity of Enhancers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	TXT SRA Run Selector	Matthew James Blow	Feb 11, 2009
GSE14344	esBAF is an essential component of the core pluripotency transcriptional network	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CEL TXT SRA Run Selector	Raja Jothi	Jan 20, 2009
GSE14586	Cdx2 Binding Sites On Cdx2 Expressing ES Cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	TXT SRA Run Selector	Minoru S.H. Ko	Oct 01, 2009
GSE15806	The Transcriptional Programme Controlled by Scl/Tal1 Gene during Early Embryonic Haematopoietic Development	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	GFF TXT SRA Run Selector	Samuel David Foster	Jun 19, 2009
GSE15844	Genome-wide mapping of Nuclear Factor I binding sites using ChIP-Seq in WT and NFI-C knock-out MEFs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED SGA TXT WIG SRA Run Selector	Milos Pjanic	Apr 24, 2010
GSE15884	High resolution analysis of epigenetic changes associated with X inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array	Mus musculus	58	BED GFF TXT WIG	H.G. Stunnenberg	Jun 06, 2009
GSE15896	Genome wide uH2A localization analysis highlights Bmi1-dependent deposition of the mark at repressed genes.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED TXT SRA Run Selector	Raja Jothi	May 20, 2009
GSE15909	Gene expression and UH2A ChIP-Seq binding analysis in Bmi1 knock-out and wild type MEFs	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CEL CHP TXT	Raja Jothi	May 20, 2009
GSE16375	Uncovering early response of gene regulatory networks in ES cells by systematic induction of transcription factors	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	342	TXT	Minoru S.H. Ko	Oct 01, 2009
GSE16526	Genome-wide map of PCL2 (Polycomb-like 2) enrichment in undifferentiated mouse embryonic stem cells (ESCs)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TXT XLS SRA Run Selector	William L Stanford	Feb 05, 2010
GSE16594	Insights into GATA-1-Mediated Gene Activation versus Repression via Genome-wide Chromatin Occupancy Analysis	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TXT SRA Run Selector	Laura Riva	Nov 25, 2009