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4435 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TXT
GSE19409	Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BAM TXT SRA Run Selector	Shaun Mahony	Dec 10, 2010
GSE19450	Rapid and synchronous clearance of PcG histone modifications from Hox genes anticipates motor neuron differentiation	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Mus musculus	33	BAM TXT	Shaun Mahony	Dec 13, 2012
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE29218	A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	122	BAM BIGWIG BOWTIE TXT SRA Run Selector	Bing Ren	Jul 01, 2012
GSE30199	Base-resolution analyses of parent-of-origin and sequence dependent allele specific DNA methylation in the mouse genome (ChIP-seq and Methyl-seq)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	10	BAM BED TXT SRA Run Selector	Wei Xie	Feb 15, 2012
GSE30298	Identification and analysis of pancreatic islet specific enhancers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BAM TXT WIG SRA Run Selector	Patrick Plettner	Jun 30, 2011
GSE30882	Embryonic stem cell based system for the discovery and mapping of developmental transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BED TXT WIG SRA Run Selector	Shaun Mahony	Nov 12, 2011
GSE31221	TCF7 is a key regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BED TXT SRA Run Selector	Jiaqian Wu	Mar 30, 2012
GSE31456	Transcriptional mechanisms controlling direct motor neuron programming	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BAM BED BW CEL TXT WIG SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE33679	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (ChIP-seq: Thymocytes)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BAM BIGWIG TXT SRA Run Selector	Hilde Schjerven	Sep 08, 2013
GSE33693	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BAM BEDGRAPH BIGWIG SAM TXT	Hilde Schjerven	Sep 08, 2013
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE244725	Harnessing HetHydrogel: An Approach to Single-Cell Multi-Omics	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	5	BAM TXT	Guoqiang Zhou	Oct 10, 2023
GSE36241	Identification of a FOXO3/IRF7 circuit that limits inflammatory sequelae of antiviral responses (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BAR BED TXT SRA Run Selector	Ayush Raman	Sep 19, 2012
GSE37052	Identification of a FOXO3/IRF7 circuit that limits inflammatory sequelae of antiviral responses	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	15	BAR BED CEL TXT	Ayush Raman	Sep 19, 2012
GSE46762	Role of Retinoids x Receptor and Retinoic Acid Receptor in Mouse Liver	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BAR TXT SRA Run Selector	Yuqi He	May 15, 2013
GSE51344	Study the effect of PARP-14 and its activity on Th2 differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAR BED TXT SRA Run Selector	Purvi Mehrotra	Dec 31, 2013