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4459 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		TXT
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE204761	Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Callithrix jacchus Mus musculus	22	RDS TXT	Paola Arlotta	May 31, 2022
GSE77543	Dynamics of NRSF/REST motif evolution favor the canonical NRSE/RE1 form	Genome binding/occupancy profiling by high throughput sequencing	Canis lupus familiaris Equus caballus Mus musculus	9	TXT SRA Run Selector	Shan Jiang	Jan 01, 2024
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE71434	Allelic reprogramming of the histone modification H3K4me3 in early mammalian development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus	57	BED TXT SRA Run Selector	Bingjie Zhang	Sep 15, 2016
GSE90462	Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	45	BIGWIG TXT	John F Rawls	Mar 27, 2017
GSE131334	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	87	BW TXT	Richard A Young	Apr 21, 2023
GSE183002	Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	75	BED BW H5 TXT	Sanjeev Galande	Sep 02, 2021
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE250367	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Danio rerio Mus musculus	3	BW NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE75855	H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation [H31_ChIP-Rx]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	6	TXT SRA Run Selector	Peter W Lewis	May 13, 2016
GSE82312	RNA-Chromatin Interactome Reveals Enhancer-Promoter Connectivity in 3D Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	12	TXT SRA Run Selector	Bing Zhou	Aug 29, 2017
GSE98649	The deacetylase activity of histone deacetylase 3 is required for productive VDJ recombination and B cell development [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	4	TXT SRA Run Selector	Scott Hiebert	Jun 05, 2017
GSE98651	The deacetylase activity of histone deacetylase 3 is required for productive VDJ recombination and B cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	8	TXT	Scott Hiebert	Jun 05, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020