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88 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus		TXT
GSE21068	Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Expression profiling by array	Homo sapiens Rattus norvegicus	12	GFF PAIR TXT WIG SRA Run Selector	Pei-Yin Hsu	Apr 29, 2010
GSE26938	Global analysis of in vivo Pax8-binding sites in rat thyroid cells using high-throughput technologies: Chip-Seq and whole genome expression arrays	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Rattus norvegicus	18	BED TXT WIG	Pilar Santisteban	Jun 28, 2012
GSE28782	Chromatin occupancy of TCF7L2 in hepatocytes	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	2	BAM TXT SRA Run Selector	Luke Norton	Sep 12, 2011
GSE38056	Novel long non-coding RNAs are involved in cellular response to angiotensin II signaling	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus	8	BED TXT SRA Run Selector	Amy Leung	Jun 30, 2013
GSE38571	Integrated transcriptomic and epigenomic analysis of primary human lung cell differentiation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	38	BED TXT	Crystal N Marconett	Apr 15, 2013
GSE42207	Rodent trophoblast epigenome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	26	BED TXT SRA Run Selector	Edward Chuong	Dec 04, 2012
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE49389	Genome-wide analysis of the rat colon reveals site-specific differences in histone modifications and proto-oncogene expression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus	7	BEDGRAPH TXT SRA Run Selector	Karen Triff	Aug 01, 2013
GSE50815	Hepatocyte Nuclear Factors 4a and 1a (Hnf4a and Hnf1a) Regulate Kidney Developmental Expression of Drug-Metabolizing Enzymes and Drug Transporters	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	8	TXT SRA Run Selector	Gleb Martovetsky	Jan 01, 2014
GSE61207	Global MEF2 target gene analysis in cardiac and skeletal muscle reveals novel regulation of DUSP6 by p38MAPKMEF2 signaling	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	8	BED TXT	John C McDermott	Sep 09, 2014
GSE65120	Genome-wide occupancy of Tcf7l2/Tcf4 in rat and expression profiling of Tcf7l2 mutant and control mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	5	TXT WIG	Richard Lu	Feb 19, 2016
GSE66653	Methylation of H3K9 by G9a/GLP protects against pathological cardiac hypertrophy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	59	TXT SRA Run Selector	Felix Krueger	Dec 05, 2016
GSE70143	The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	10	TXT SRA Run Selector	Chia-Feng Liu	Jun 23, 2015
GSE70144	The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	16	TXT	Chia-Feng Liu	Jun 23, 2015
GSE70354	Genomic binding and regulation of gene expression by the thyroid carcinoma-associated PAX8-PPARG fusion protein	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	14	TXT SRA Run Selector	Bing Ren	Jan 21, 2016
GSE70695	Genome-wide sequencing of REST binding (ChIP-seq) in adult hippocampal neural stem cells in vitro a.k.a. HCN cells in quiescent (iQNP) and proliferative (TAP) conditions	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	6	TXT SRA Run Selector	Jenny Hsieh	Nov 09, 2016
GSE72727	Chromatin Remodeler CHD7 mutated in CHARGE Syndrome Interacts with Sox10 to Regulate Timing of CNS Myelination and Remyelination.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	6	BED TXT	Richard Lu	Feb 29, 2016
GSE75458	MBD3 expression and DNA binding patterns are altered in a rat model of temporal lobe epilepsy	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	9	TXT SRA Run Selector	Katarzyna Lukasiuk	Nov 29, 2018
GSE75698	Comparative transcriptomic and epigenomic analyses reveal new regulators of murine brown adipogenesis	Expression profiling by high throughput sequencing Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	72	TXT WIG	Wei Xie	Dec 31, 2016
GSE76412	Hdac3 Interaction with p300 Histone Acetyltransferase Regulates the Oligodendrocyte and Astrocyte Lineage Fate Switch	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	6	BED TXT	Richard Lu	Feb 21, 2016