GEO Browser - GEO

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42 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	synthetic construct
GSE247432	Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	53	BED BIGWIG TXT	Lu Bai	Nov 09, 2023
GSE218472	Enhancer grammar of liver cell types and hepatocyte zonation states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	79	BW TSV	Carmen Bravo Gonzalez-Blas	Sep 07, 2023
GSE218852	Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster synthetic construct	70	BW NARROWPEAK TXT	Kaelan Joseph Brennan	Dec 20, 2022
GSE223659	Missense mutations in CRX homeodomain cause dominant retinopathies through two distinct mechanisms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	68	BIGWIG NARROWPEAK	Shiming Chen	Nov 08, 2023
GSE256215	Aberrant homeodomain-DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	32	BIGWIG NARROWPEAK TSV TXT	Shiming Chen	Nov 22, 2024
GSE213876	Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome	Other Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Mus musculus synthetic construct	67	NARROWPEAK TXT	Xiaolong Cui	Dec 28, 2023
GSE229586	Unbiased transcription factor CRISPR screen identifies ZNF800 as master repressor of enteroendocrine differentiation.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens synthetic construct	20	BW MTX TSV TXT	Jeff DeMartino	Oct 26, 2023
GSE184454	Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster synthetic construct	61	BIGWIG PDF TXT SRA Run Selector	Siqian Feng	May 23, 2022
GSE84888	Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	21	TXT SRA Run Selector	Sharon R Grossman	Feb 03, 2017
GSE188405	A cis-regulatory lexicon of DNA motif combinations mediating cell type-specific gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	90	BED CSV TXT	Margaret Guo	Aug 17, 2022
GSE193224	A giant virus genome is densely packaged by stable nucleosomes	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Marseillevirus marseillevirus synthetic construct	117	BED BEDGRAPH BIGWIG FASTA PDF	Jorja Henikoff	Sep 27, 2022
GSE62777	Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	317	BED TDF TXT	Shannan Ho Sui	Jul 16, 2015
GSE123645	Super-enhancer driven MYST family histone lysine acetyltransferases are critical for nasopharyngeal carcinoma cell growth and survival	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	9	TXT SRA Run Selector	Sizun Jiang	Nov 21, 2022
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20	BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE152640	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens synthetic construct	36	BW IDAT VCF	Peter A Jones	Jun 17, 2020
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces uvarum synthetic construct	123	BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018
GSE180158	Sequence determinants of human gene regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	80	BROADPEAK NARROWPEAK TSV TXT	Teemu Kivioja	Nov 12, 2021
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE241708	Genomic context sensitizes regulatory elements to genetic disruption	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	154	BW TXT	Matthew T Maurano	Mar 13, 2024
GSE144454	A genome wide screening for effectors of chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	75	BW	Yusuke Miyanari	May 01, 2022