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743 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana
GSE145387	The Transcriptional Repressors VAL1 and VAL2 Recruit PRC2 for Genome-wide Polycomb Silencing in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	TXT SRA Run Selector	Liang Bing Yuan	Nov 06, 2020
GSE107752	35S-SUC2 WT and antisilencing mutants	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	26	WIG	Huang Huan	Dec 06, 2020
GSE233528	3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	14	BW TXT	Li Deng	Jul 10, 2023
GSE233525	3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BW	Li Deng	Jul 10, 2023
GSE233526	3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BW	Li Deng	Jul 10, 2023
GSE94486	A B-ARR-mediated cytokinin transcriptional network directs hormone-cross regulation and shoot development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BED DIFF SRA Run Selector	Joseph R Ecker	Apr 25, 2018
GSE108414	A DNA methylation reader complex that enhances gene transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	89	BW SRA Run Selector	C. Jake Harris	Dec 06, 2018
GSE183209	A GRAS family transcription factor negatively regulates cell division and positively affects cell size through SIM/SMR transcription	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	5	BW NARROWPEAK SRA Run Selector	Jing An	Feb 15, 2022
GSE67778	A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	26	BEDGRAPH	Judy Brusslan	Apr 11, 2015
GSE132316	A MYC2, MYC3, MYC4-dependent transcription factor network regulates touch responses in plants	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	WIG SRA Run Selector	Joseph R Ecker	Oct 29, 2019
GSE89320	A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BEDGRAPH TDF WIG	Jian-Kang Zhu	Dec 29, 2016
GSE167508	A REF6-dependent H3K27me3-depleted state facilitates gene activation during germination in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	71		Jie Pan	Sep 30, 2022
GSE167503	A REF6-dependent H3K27me3-depleted state facilitates gene activation during germination in Arabidopsis [H3K27me3 ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	36	BW SRA Run Selector	Jie Pan	Sep 28, 2022
GSE167505	A REF6-dependent H3K27me3-depleted state facilitates gene activation during germination in Arabidopsis [REF6-HA ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	11	BW SRA Run Selector	Jie Pan	Sep 28, 2022
GSE64245	A SAM oligomerization domain shapes the genomic binding landscape of the LEAFY transcription factor	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	BED SRA Run Selector	Francois Parcy	Apr 08, 2016
GSE202802	A VEL3 histone deacetylase complex establishes a maternal epigenetic state controlling progeny seed dormancy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	38	BW CSV	Xiaochao Chen	Mar 16, 2023
GSE51121	A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	12	WIG	Kengo Morohashi	Mar 05, 2014
GSE51120	A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	2	BED WIG SRA Run Selector	Kengo Morohashi	Mar 05, 2014
GSE24568	A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Felix Ott	May 13, 2011
GSE101428	A bivalent histone reader is an epigenetic switch regulating floral phase transition	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	BW SRA Run Selector	Christine Wooddell	Jul 14, 2018