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11 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana			SRA Run Selector	Joseph R Ecker
GSE94486	A B-ARR-mediated cytokinin transcriptional network directs hormone-cross regulation and shoot development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14		BED DIFF SRA Run Selector	Joseph R Ecker	Apr 25, 2018
GSE132316	A MYC2, MYC3, MYC4-dependent transcription factor network regulates touch responses in plants	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3		WIG SRA Run Selector	Joseph R Ecker	Oct 29, 2019
GSE80564	ChIP-seq of abscisic acid-reponsive transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	124		BED SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE80566	ChIP-seq of abscisic acid-reponsive transcription factors [DIG]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3		BED SRA Run Selector	Joseph R Ecker	Feb 03, 2017
GSE68193	Cryptochromes interact directly with PIFs to control plant growth in limiting blue light	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	13		BED SRA Run Selector	Joseph R Ecker	Dec 31, 2015
GSE122314	Epigenetic Control of a Multifunctional Stress Regulator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	126		TSV TXT SRA Run Selector	Joseph R Ecker	Aug 19, 2019
GSE139296	PHYTOCHROME INTERACTING FACTORs trigger environmentally responsive chromatin dynamics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	109		BW TSV TXT SRA Run Selector	Joseph R Ecker	Apr 30, 2021
GSE108401	The Complex Architecture of Transgene Insertions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	39		BW TSV TXT SRA Run Selector	Joseph R Ecker	Mar 16, 2018
GSE60142	The DNA affinity purification DAP-Seq assay [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6		NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016
GSE133408	The jasmonate-response genome regulatory program is defined by the direct targets of transcription factors MYC2 and MYC3, chromatin modification and gene expression changes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	96		BED CSV TXT WIG SRA Run Selector	Joseph R Ecker	Mar 13, 2020
GSE226826	Time-resolved single-cell and spatial gene regulatory atlas of plants under pathogen attack	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	36		RDS SRA Run Selector	Joseph R Ecker	Apr 24, 2023