GEO Browser - GEO

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42 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group
GSE149217	Atlas of chromatin accessibility and translatome of tomato and rice root tip cell types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group Solanum lycopersicum	145	BED BW CSV SRA Run Selector	Siobhan Brady	Mar 24, 2021
GSE128495	Genome-wide identification of SNAC1-targeted genes involved in drought response in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	30	TXT SRA Run Selector	Yu Chang	Mar 19, 2019
GSE136373	A lamin-like protein OsNMCP1 regulates drought resistance and root growth partially through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	29	BW TAB SRA Run Selector	Yu Chang	Jun 04, 2020
GSE183241	Stress-induced nuclear translocation of transcription factor ONAC023 improves drought and heat tolerance through integrated regulation of multiple processes in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	49	BW TXT SRA Run Selector	Yu Chang	Jun 13, 2024
GSE207132	Serine protease NAL1 exerts pleiotropic functions through degradation of TOPLESS-related corepressor in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	6	BW	Yu Chang	May 09, 2023
GSE104306	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	9	TAR TXT XLS SRA Run Selector	Saifeng Cheng	Jan 21, 2018
GSE128680	Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Medicago truncatula Oryza sativa Japonica Group Solanum lycopersicum Solanum pennellii	231	BED BW TXT XLSX SRA Run Selector	Roger B Deal	Sep 19, 2019
GSE217841	R-loops act as a master regulatory switch modulating transcription of cold-responsive genes in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Oryza sativa Japonica Group	31	BW TXT	Zexue He	Sep 26, 2023
GSE30490	Genome-wide maps of H3K4me3 and H3K27me3 in HY(Hwayong) and chd1(chr729) rice.	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	4	FA FASTQ TXT WIG SRA Run Selector	yongfeng hu	Mar 10, 2012
GSE222734	A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	24	BROADPEAK BW NARROWPEAK TXT	Qingxiao Jia	Jul 26, 2023
GSE126436	Evolution of heterochromatin and heterochromatin genes in the Oryza genomes reveals a new heterochromatin-euchromatin boundary [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Leersia perrieri Oryza brachyantha Oryza glaberrima Oryza punctata Oryza sativa Japonica Group Sorghum bicolor	38	BED SRA Run Selector	Lei Li	Dec 02, 2020
GSE126444	Evolution of heterochromatin and heterochromatin genes in the Oryza genomes reveals a new heterochromatin-euchromatin boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Leersia perrieri Oryza brachyantha Oryza glaberrima Oryza punctata Oryza sativa Oryza sativa Japonica Group Sorghum bicolor	47	BED BEDGRAPH FPKM_TRACKING	Lei Li	Dec 02, 2020
GSE196604	Genomic variations combined with epigenetic modifications rewire open chromatin in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Japonica Group	8	BED BW TXT	Mengqi Li	Sep 02, 2023
GSE226812	Chromatin mechanism of DELLA-mediated gene repression and Gibberellin-induced gene activation in rice	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa Japonica Group	20	BROADPEAK BW CSV	Qi Li	Aug 11, 2023
GSE214050	3D epigenome architecture orchestrates cis and trans regulation of flowering time in rice [ChIA-PET]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Japonica Group	12	BEDPE	yue li	Sep 28, 2022
GSE214069	3D epigenome architecture orchestrates cis and trans regulation of flowering time in rice [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Japonica Group	12	BW	yue li	Sep 28, 2022
GSE214073	3D epigenome architecture orchestrates cis and trans regulation of flowering time in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Indica Group Oryza sativa Japonica Group	24	BW	yue li	Sep 28, 2022
GSE111308	Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	41	TXT XLSX SRA Run Selector	Yue Lu	Sep 08, 2018
GSE184783	Genome-wide characterization of i-motifs and their potential roles in the stability and evolution of transposable elements in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	5	BED SRA Run Selector	Xing Ma	Apr 13, 2022
GSE234751	Differential impacts of DNA methylation on pH dependent i-motifs formation in rice [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	17	NARROWPEAK	Xing Ma	Feb 15, 2024