GEO Browser - GEO

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55 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa		SRA Run Selector
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE26610	DNase I hypersensitive sites in two tissues of rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	TXT SRA Run Selector	Yufeng Wu	Nov 09, 2011
GSE26733	ChIP-seq to identify the positions of three histone modifications in the rice genome	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	SRA Run Selector	Yufeng Wu	Nov 09, 2011
GSE27048	Genome-wide maps of chromatin state in rice endosperm	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	BED WIG SRA Run Selector	Feng Tan	Dec 06, 2011
GSE41183	OsJMJ703, a Histone H3K4 Demethylase, Controls Transposon Activity in Rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	WIG SRA Run Selector	xiaofeng cao	Jan 01, 2013
GSE40054	ChIP-seq analysis of SRT1 and H3K9ac in MH63 and srt1 RNAi.	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	BED TXT WIG XLS SRA Run Selector	zhong xiaochao	Feb 10, 2013
GSE50755	The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	6	WIG SRA Run Selector	Tao Zhang	Nov 06, 2013
GSE40674	Genome-wide maps of H3K27me3 in WT (wild type) and Epi-df (mutant) rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	2	WIG SRA Run Selector	Liguo Zhang	Dec 04, 2013
GSE42201	Chromatin immunoprecipitation of MADS29 to find the cis regulatory regions and targets of this transcription factor	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	TXT SRA Run Selector	Sanjay Kapoor	Dec 31, 2013
GSE37242	Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	TXT SRA Run Selector	Shuhui Song	Apr 15, 2014
GSE53027	Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	3	GFF TXT SRA Run Selector	Yufeng Wu	May 01, 2014
GSE66537	Global Epigenomic Analysis Indicates that Epialleles Contribute to Allele-specific Expression via Allele-specific Histone Modifications in Hybrid Rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	10	XLS SRA Run Selector	Zhibin Guo	Sep 30, 2015
GSE69426	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Oryza sativa	5	BW SRA Run Selector	Xuehua Zhong	Dec 01, 2015
GSE75794	Nucleosome free chromatin measured by ATAC-seq in Rice leaves (Oryza sativa)	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	18	GFF SRA Run Selector	Christoph Hafemeister	Jan 01, 2016
GSE72694	miR396-OsGRF6 module controls rice inflorescence architecture	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	TXT SRA Run Selector	Wang Kun	May 13, 2016
GSE72186	Genome-wide characterization of cis-acting DNA targets of OsNF-YB1 in rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	BED TXT SRA Run Selector	Jingjng Xu	Dec 16, 2016
GSE79033	Functional characterization of open chromatin in bidirectional promoters of rice	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	6	BED WIG SRA Run Selector	Fang Yuan	Jan 26, 2017
GSE80986	The regulatory network of OsNAC6 targets drought-related genes orchestrating rice drought tolerance	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	5	TXT SRA Run Selector	Pil Joong Chung	Apr 29, 2017
GSE101482	ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Medicago truncatula Oryza sativa Solanum lycopersicum	15	BED SRA Run Selector	Roger B Deal	Jul 26, 2017