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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum
GSE139019	An atlas of wheat epigenetic regulatory elements reveals subgenome-divergence in the regulation of development and stress responses	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Triticum aestivum	124	BED BW TXT SRA Run Selector	yijing zhang	Feb 04, 2021
GSE63752	Centromere misdivision promotes centromeric sequence changes, de novo centromere formation, and centromere expansion	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	2	BEDGRAPH SRA Run Selector	Handong Su	Apr 02, 2016
GSE214737	Chromatin accessibility landscapes revealed the subgenome-divergent regulation networks during wheat grain development [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	8	BED	Zefu Lu	Feb 15, 2023
GSE214739	Chromatin accessibility landscapes revealed the subgenome-divergent regulation networks during wheat grain development.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Triticum aestivum	16	BED TXT	Zefu Lu	Feb 15, 2023
GSE133885	Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Brassica napus Triticum aestivum	10	BIGWIG NARROWPEAK TSV TXT	Lorenzo Concia	Mar 02, 2020
GSE133879	Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories (Wheat_ATAC)	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	1	BIGWIG NARROWPEAK SRA Run Selector	Lorenzo Concia	Mar 02, 2020
GSE133880	Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories (Wheat_ChIP)	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	1	BIGWIG NARROWPEAK SRA Run Selector	Lorenzo Concia	Mar 02, 2020
GSE192815	Death and birth of transposable elements underlie subgenome convergent and divergent transcription in common wheat	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	194	BED BW	yijing zhang	Oct 08, 2022
GSE153289	Differential chromatin accessibility landscape reveals the structural and functional features of the allopolyploid wheat chromosomes	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	4	BW SRA Run Selector	Eduard Akhunov	Jun 26, 2020
GSE178372	Distinct chromatin signatures and transcriptional landscape of functional genetic elements in allohexaploid wheat	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Triticum aestivum	27	BED BEDGRAPH BW TXT	yijing zhang	Jun 17, 2021
GSE121903	Distinct chromatin signitures of promoters, enhancers and transposons in allohexaploid wheat	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Triticum aestivum	18	BED BW TXT SRA Run Selector	yijing zhang	Jun 21, 2019
GSE232430	Identifications of vernalization regulatory elements by epigenomic approaches in winter wheat	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	46	BED BW TXT	Zefu Lu	Jul 22, 2024
GSE232424	Identifications of vernalization regulatory elements by epigenomic approaches in winter wheat (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	14	BED BW	Zefu Lu	Jul 22, 2024
GSE232426	Identifications of vernalization regulatory elements by epigenomic approaches in winter wheat (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	20	BW TXT	Zefu Lu	Jul 22, 2024
GSE245464	Investigation of potential targets of TaSPL6-D in wheat	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	3	NARROWPEAK	yu zhang	Mar 10, 2024
GSE218538	LHP1-mediated conditional repression of subgenome-diversified defenses is responsible for the high plasticity of allopolyploid wheat	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Triticum aestivum	21	BW TXT XLS	yijing zhang	Oct 12, 2023
GSE188724	Low-affinity SPL binding sites contribute to subgenome expression divergence in allohexaploid wheat	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Triticum aestivum	72	TXT	Zefu Lu	Nov 28, 2022
GSE188696	Low-affinity SPL binding sites contribute to subgenome expression divergence in allohexaploid wheat [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	8	BED SRA Run Selector	Zefu Lu	Nov 28, 2022
GSE198284	Subgenome-specific usage of transposable element-derived promoters and enhancers in bread wheat development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Triticum aestivum Triticum urartu	56	BED BW TXT	yijing zhang	Oct 12, 2023
GSE213962	Temporally-coordinated bivalent histone modifications of BCG1 enable fungal invasion and immune evasion	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Fusarium graminearum PH-1 Triticum aestivum	37	BW	zhao xiao zhen	Dec 04, 2023