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89 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		BED
GSE147927	A high-resolution protein architecture of the budding yeast genome	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	1251	BED BW SRA Run Selector	B. Franklin Pugh	Jan 13, 2021
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae Schizosaccharomyces pombe	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE149807	Strand-specific ChIP-seq at DNA breaks distinguishes single versus doubled stranded DNA binding and refutes single stranded nucleosomes	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	314	BED BEDGRAPH SRA Run Selector	Martina Peritore	Mar 01, 2021
GSE137711	High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	288	BED BEDPE BW	Folkert van Werven	Dec 15, 2020
GSE208590	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	234	BED BW TSV	Karl-Uwe Reusswig	Jul 19, 2022
GSE182203	Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	222	BED BW SRA Run Selector	Karl-Uwe Reusswig	Sep 07, 2021
GSE84240	Elucidating Combinatorial Chromatin States at Single-Nucleosome Resolution	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	180	BED CSV SRA Run Selector	Nir Friedman	Aug 02, 2016
GSE156040	Two pathways drive meiotic chromosome axis assembly in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	161	BED BEDGRAPH BROADPEAK CSV XLSX SRA Run Selector	Andreas Hochwagen	Apr 08, 2022
GSE29064	Structural mapping of regulatory function of histone H3 and H4 residues	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Saccharomyces cerevisiae	135	BED PAIR TXT	Inkyung Jung	Dec 05, 2012
GSE84474	Cut-and-Run in situ factor profiling maps DNA binding and 3D contact sites at high resolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Saccharomyces cerevisiae	126	BED BEDGRAPH RTF SRA Run Selector	Jorja Henikoff	Dec 30, 2016
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces uvarum synthetic construct	123	BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018
GSE33466	Open chromatin maps of genetically different yeast strains	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	96	BED SRA Run Selector	kwoneel kim	Nov 02, 2012
GSE242400	DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Saccharomyces cerevisiae	82	BED BIGWIG COOL MATRIX TXT	Lu Bai	Sep 05, 2023
GSE81289	Mediator binding to UASs is broadly uncoupled from transcription and cooperative with TFIID recruitment to promoters	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	76	BED RTF WIG SRA Run Selector	Jorja Henikoff	Oct 20, 2016
GSE151692	Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	76	BED BW NARROWPEAK SRA Run Selector	Wim J de Jonge	Jun 04, 2020
GSE135568	A multi-omics dataset of heat-shock response in the yeast RNA transport protein Mip6	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	67	BED XLSX SRA Run Selector	Susana Rodríguez Navarro	Nov 21, 2019
GSE107967	Nuclear dynamics of the Set1C subunit Spp1 prepares meiotic recombination sites for break formation	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	64	BED BEDGRAPH SRA Run Selector	Halasz Laszlo	Jul 17, 2018
GSE214930	Sen1 and Rrm3 ensure permissive topological conditions for replication termination	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	64	BED BEDGRAPH CEL	Mohamood Adhil Mohammed Iqbal	Oct 11, 2022
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE141975	Structural clusters of histone H3 and H4 residues regulate chronological lifespan in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	62	BED TXT WIG	Hugh Patterton	Dec 13, 2019