GEO Browser - GEO

Series

Samples

Platforms

DataSets

493 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		SRA Run Selector
GSE22211	Genome-wide nucleosome position data for 12 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Yarrowia lipolytica Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces cerevisiae Saccharomyces bayanus Naumovozyma castellii Nakaseomyces glabratus Lachancea waltii Lachancea kluyveri NRRL Y-12651 Kluyveromyces lactis Debaryomyces hansenii Candida albicans	13	TXT WIG SRA Run Selector	Alex M Tsankov	Jul 06, 2010
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Synthetic plasmid Saccharomyces cerevisiae Mus musculus	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	synthetic construct Saccharomyces cerevisiae Mus musculus Homo sapiens	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Saccharomyces cerevisiae x Saccharomyces uvarum Saccharomyces cerevisiae	123	BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018
GSE28839	Genome-wide nucleosome position data for 3 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae Candida albicans	7	TXT WIG SRA Run Selector	Alex M Tsankov	Aug 01, 2011
GSE84910	Nucleosomal signatures impose nucleosome positioning in coding and non-coding sequences in the genome	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	46	WIG SRA Run Selector	Enrique Vazquez de Luis	Sep 20, 2016
GSE85147	RNA surveillance controls 3D genome structure via stable cohesin chromosome interaction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Schizosaccharomyces pombe Saccharomyces cerevisiae	120	SRA Run Selector	Yoonjung Choi	Dec 01, 2022
GSE106104	Acute condensin depletion causes genome decompaction without altering the level of global gene expression in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Schizosaccharomyces pombe Saccharomyces cerevisiae Caenorhabditis elegans	43	CSV TXT SRA Run Selector	Matthew R Paul	Oct 25, 2017
GSE128225	Calibrated Scc1 ChIP-seq for wild type and rad61Δ strains arrested in metaphase with and without tension	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	4	BW SRA Run Selector	Daniel Robertson	Jan 13, 2020
GSE128227	Calibrated Scc1, Sgo1 and Brn1 ChIP-seq in metaphase with and without tension, in strains where convergent genes at pericentromere borderes are rearranged into a tandem orientation	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	12	BW SRA Run Selector	Daniel Robertson	Jan 13, 2020
GSE128236	Calibrated Sgo1 and Brn1 ChIP-seq for wild type strains arrested in metaphase without tension	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	8	BW SRA Run Selector	Daniel Robertson	Jan 13, 2020
GSE128238	Calibrated Scc1 ChIP-seq for wild type and chl4Δ strains arrested in metaphase with and without tension	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	10	BW SRA Run Selector	Daniel Robertson	Jan 13, 2020
GSE131558	Cohesin causes replicative DNA damage by trapping DNA topological stress	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	114	SRA Run Selector	Andrea Keszthelyi	Mar 03, 2020
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae Escherichia coli	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE141676	Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae Neurospora crassa	13	FASTA GTF SGR SRA Run Selector	Jeffrey N McKnight	Dec 10, 2019
GSE150800	Chromosomal Mcm2-7 distribution and the genome replication program in species from yeast to humans	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae Mus musculus x Mus spretus Homo sapiens	22	BEDGRAPH FASTA TXT SRA Run Selector	Eric Jan Foss	May 18, 2021
GSE167842	Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe Saccharomyces cerevisiae	72	BIGWIG SRA Run Selector	Georgi Kolev Marinov	Dec 01, 2021
GSE88952	The dynamic three-dimensional organization of the diploid yeast genome	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces uvarum Saccharomyces paradoxus x Saccharomyces uvarum Saccharomyces paradoxus Saccharomyces cerevisiae x Saccharomyces uvarum Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces cerevisiae	44	BED BEDGRAPH GFF TXT SRA Run Selector	Seungsoo Kim	Dec 05, 2016
GSE18939	Comparison of nucleosome positioning among two yeast species and their hybrid for wild-type and deletion mutant strains	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces paradoxus Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces cerevisiae	12	TXT SRA Run Selector	Itay Tirosh	Mar 01, 2010
GSE71929	Whole-genome nucleosome mapping in meiotic diploid Saccharomyces species (S. paradoxus, S. mikatae, S. kudriavzevii) and wild-derived S. cerevisiae strains (YPS128, UWOPS03-461.4)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces paradoxus Saccharomyces mikatae Saccharomyces kudriavzevii Saccharomyces cerevisiae	12	TXT SRA Run Selector	Isabel Lam	Aug 17, 2015