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178 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		TXT
GSE52863	Meiotic recombination cold spots in chromosomal cohesion sites	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae Schizosaccharomyces pombe	12	BAR BEDGRAPH CEL TXT	Masaru Ito	Mar 31, 2014
GSE16926	ORC precisely positions nucleosomes at origins of replication	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	BED PDF TXT SRA Run Selector	Matthew Lucas Eaton	Mar 19, 2010
GSE26449	Genome-wide mapping of meiotic double-strand breaks by sequencing Spo11 oligos.	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BED TXT SRA Run Selector	Scott Keeney	Mar 07, 2011
GSE29064	Structural mapping of regulatory function of histone H3 and H4 residues	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Saccharomyces cerevisiae	135	BED PAIR TXT	Inkyung Jung	Dec 05, 2012
GSE29291	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [single-end MNase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	6	BED TXT SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29292	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [Paired-end Mnase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BED TXT SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29294	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	20	BED TXT WIG	Jason D Lieb	Sep 26, 2012
GSE31466	Centromere-Like Regions in Budding Yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	13	BED SGR TXT SRA Run Selector	Raymond K Auerbach	Jan 18, 2013
GSE51949	The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	17	BED TXT WIG SRA Run Selector	Jorja Henikoff	Apr 15, 2014
GSE52000	The Ino80 complex prevents invasion of euchromatin into silent chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	27	BED TXT SRA Run Selector	Siavash K Kurdistani	Jan 22, 2015
GSE70287	The kinase/ATPase Rio1 coordinates yeast metabolism, physiology, growth and cell division at multiple levels	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	9	BED TXT	Peter De Wulf	Jun 14, 2018
GSE76461	The role of Sgf73 occupancy	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	5	BED TXT SRA Run Selector	Albert R. La Spada	Jun 12, 2017
GSE79222	Genome-wide analysis of RNA polymerase II termination at protein-coding genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	44	BED TXT SRA Run Selector	Carlo Bäjen	Mar 15, 2017
GSE88952	The dynamic three-dimensional organization of the diploid yeast genome	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces cerevisiae x Saccharomyces uvarum Saccharomyces paradoxus Saccharomyces paradoxus x Saccharomyces uvarum Saccharomyces uvarum	44	BED BEDGRAPH GFF TXT SRA Run Selector	Seungsoo Kim	Dec 05, 2016
GSE100643	Centromeres license the mitotic condensation of yeast chromosome arms	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	51	BED BW FA GTF TXT SRA Run Selector	Pierre Chymkowitch	Oct 11, 2018
GSE112061	Structural Analysis of the Ash2L/Dpy-30 Complex Reveals a Heterogeneity in H3K4 Methylation	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	17	BED BW TXT SRA Run Selector	Ali Shilatifard	Mar 11, 2019
GSE114444	Effect of top2 and hmo1 on chromatin architecture and transcription in yeast	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	18	BED BEDGRAPH TXT SRA Run Selector	Mohamood Adhil Mohammed Iqbal	Jul 02, 2018
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces uvarum synthetic construct	123	BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae Schizosaccharomyces pombe	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE141975	Structural clusters of histone H3 and H4 residues regulate chronological lifespan in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	62	BED TXT WIG	Hugh Patterton	Dec 13, 2019