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178 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		TXT
GSE106104	Acute condensin depletion causes genome decompaction without altering the level of global gene expression in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans Saccharomyces cerevisiae Schizosaccharomyces pombe	43	CSV TXT SRA Run Selector	Matthew R Paul	Oct 25, 2017
GSE21960	The role of nucleosome positioning in the evolution of gene regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	61	TXT WIG	Alex M Tsankov	Jul 06, 2010
GSE22211	Genome-wide nucleosome position data for 12 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	13	TXT WIG SRA Run Selector	Alex M Tsankov	Jul 06, 2010
GSE28839	Genome-wide nucleosome position data for 3 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Saccharomyces cerevisiae Schizosaccharomyces pombe	7	TXT WIG SRA Run Selector	Alex M Tsankov	Aug 01, 2011
GSE15188	Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	3	TXT WIG SRA Run Selector	Ghia Euskirchen	Jul 15, 2009
GSE23712	High-throughput sequencing reveals a simple model of nucleosome energetics	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	1	TXT WIG	George Locke	Aug 20, 2010
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae Schizosaccharomyces pombe	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE152882	High-resolution, genome-wide mapping of positive supercoiling in chromosomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli str. K-12 substr. MG1655 Saccharomyces cerevisiae	28	TXT WIG	Monica S Guo	Jun 25, 2021
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Saccharomyces cerevisiae synthetic construct	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE131807	Glutarylation of Histone H4 Lysine 91 Regulates Chromatin Dynamics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Saccharomyces cerevisiae	8	BW TXT SRA Run Selector	Jason Wong	Sep 16, 2019
GSE150800	Chromosomal Mcm2-7 distribution and the genome replication program in species from yeast to humans	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus x Mus spretus Saccharomyces cerevisiae Schizosaccharomyces pombe	22	BEDGRAPH FASTA TXT SRA Run Selector	Eric Jan Foss	May 18, 2021
GSE65889	Novel nucleosomal particles containing core histones and linker DNA but no histone H1	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae Synthetic plasmid	31	BW FA TXT SRA Run Selector	David Johannes Clark	Sep 23, 2015
GSE95633	MINC Regulates Pervasive Transcription in Yeast and Mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	117	BEDGRAPH TXT XLSX SRA Run Selector	Siavash K Kurdistani	Jul 08, 2017
GSE108736	Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	38	TXT SRA Run Selector	David Pincus	Jan 11, 2018
GSE142996	DNA polymerase α interacts with H3-H4 and facilitates the transfer to parental histones to lagging strand	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Saccharomyces cerevisiae	99	BW TXT ZIP SRA Run Selector	zhiguo zhang	Sep 02, 2020
GSE23577	Nucleosome positioning for 4 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Nakaseomyces glabratus Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces kudriavzevii	4	TXT SRA Run Selector	Kyle Tsui	Dec 09, 2011
GSE169760	Spo11 generates gaps through concerted cuts at sites of topological stress [Top2]	Genome binding/occupancy profiling by high throughput sequencing	Nakaseomyces glabratus Saccharomyces cerevisiae	8	TXT WIG XLSX SRA Run Selector	Franz Klein	Jun 09, 2021
GSE171046	Spo11 generates gaps through concerted cuts at sites of topological stress	Genome binding/occupancy profiling by high throughput sequencing	Nakaseomyces glabratus Saccharomyces cerevisiae Saccharomyces kudriavzevii	71	TAR TXT WIG	Franz Klein	Jun 09, 2021
GSE193044	Histone turnover during DNA replication	Genome binding/occupancy profiling by high throughput sequencing Other	Nakaseomyces glabratus Saccharomyces cerevisiae	419	TXT	Naama Barkai	Feb 18, 2022
GSE253302	Physical interaction with Spo11 mediates the localisation of Mre11 to chromatin in meiosis and promotes its nuclease activity	Genome binding/occupancy profiling by high throughput sequencing	Nakaseomyces glabratus Saccharomyces cerevisiae	12	TXT XLSX	Franz Klein	Jan 25, 2024