GEO Browser - GEO

Series

Samples

Platforms

DataSets

115 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae		WIG
GSE236948	Surprising mechanisms and regulatory roles of yeast transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	1496	BW TXT WIG	Lakshmi Mahendrawada	Aug 01, 2023
GSE171067	BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	264	CSV WIG	Rafal Donczew	Jun 09, 2021
GSE190778	Mediator facilitates transcription initiation at most promoters via a Tail-independent mechanism	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	256	CSV WIG	Rafal Donczew	Aug 22, 2022
GSE44879	A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription	Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	185	BAR CEL WIG	Harm van Bakel	May 22, 2013
GSE142122	Two separate roles for the transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	128	CSV WIG	Rafal Donczew	Jan 08, 2020
GSE171062	BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae (ChEC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	122	WIG SRA Run Selector	Rafal Donczew	Jun 09, 2021
GSE171063	BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	100	WIG SRA Run Selector	Rafal Donczew	Jun 09, 2021
GSE207793	The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	100	BW TAB WIG	Junwoo Lee	Jun 01, 2023
GSE81289	Mediator binding to UASs is broadly uncoupled from transcription and cooperative with TFIID recruitment to promoters	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	76	BED RTF WIG SRA Run Selector	Jorja Henikoff	Oct 20, 2016
GSE235560	Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	75	BW HIC TXT WIG	Kristian Jeppsson	Jan 30, 2024
GSE171046	Spo11 generates gaps through concerted cuts at sites of topological stress	Genome binding/occupancy profiling by high throughput sequencing	Nakaseomyces glabratus Saccharomyces cerevisiae Saccharomyces kudriavzevii	71	TAR TXT WIG	Franz Klein	Jun 09, 2021
GSE109235	Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	70	BEDGRAPH BW WIG SRA Run Selector	Maria Jessica Bruzzone	Aug 15, 2018
GSE199444	Global early replication disrupts gene expression and chromatin conformation in a single cell cycle: MNAse-Seq mapping	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	70	WIG	Philip Zegerman	Sep 23, 2022
GSE43002	The yeast Snt2 protein helps coordinate the transcriptional response to hydrogen-peroxide mediated oxidative stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	66	WIG	David Allis	Jul 24, 2013
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE97801	Evolution of Reduced Co-Activator Dependence Led to Target Expansion of a Starvation Response Pathway	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Nakaseomyces glabratus Saccharomyces cerevisiae	62	WIG	Bin He	Apr 15, 2017
GSE136605	Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication	Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	62	BIGWIG BW CEL WIG	romain forey	Mar 17, 2020
GSE141975	Structural clusters of histone H3 and H4 residues regulate chronological lifespan in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	62	BED TXT WIG	Hugh Patterton	Dec 13, 2019
GSE21960	The role of nucleosome positioning in the evolution of gene regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	61	TXT WIG	Alex M Tsankov	Jul 06, 2010
GSE256156	Effects of formalin-fixation on FAIRE-Seq and MNase-Seq signatures in yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	58	WIG	Erin Elizabeth Hahn	Mar 01, 2024