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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa
GSE61173	H3K9me3 ChIP-seq from Neurospora crassa wild type (WT) and dim-3 (severely reduced H3K9me3 levels) strains	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	2	TDF SRA Run Selector	Andrew David Klocko	Mar 22, 2015
GSE61175	Neurospora importin alpha compromises H3K9me3 and cytosine methylation levels through inappropriate localization of the heterochromatin machinery	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	5	TDF WIG	Andrew David Klocko	Mar 22, 2015
GSE68516	Identification of direct target genes of the Neurospora crassa essential plant biomass deconstruction transcription factors CLR-1, CLR-2 and XLR-1 (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	22	XLSX SRA Run Selector	James Craig	Sep 01, 2015
GSE68517	Identification of direct target genes of the Neurospora crassa essential plant biomass deconstruction transcription factors CLR-1, CLR-2 and XLR-1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	33	TXT	James Craig	Sep 01, 2015
GSE68897	Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	27	TDF SRA Run Selector	Eric Selker	Nov 03, 2015
GSE71024	HiC of Wild Type Neurospora crassa and mutants deficient in heterochromatin formation	Genome binding/occupancy profiling by high throughput sequencing Other	Neurospora crassa	5	FASTA GTF TDF TXT SRA Run Selector	Andrew David Klocko	May 19, 2016
GSE78157	Genomic analysis of N. crassa histone H1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	22	TDF TXT SRA Run Selector	Zachary A Lewis	Apr 20, 2016
GSE81129	Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	7	IGV TDF SRA Run Selector	Michael R Rountree	Jan 01, 2017
GSE82222	Neurospora crassa genome organization requires subtelomeric facultative heterochromatin	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BCF FASTA GTF TDF TXT XLSX SRA Run Selector	Andrew David Klocko	Oct 27, 2016
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE100770	Saturating the Neurospora crassa genome for defective in methylation (dim) mutants	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	3	TDF SRA Run Selector	Andrew David Klocko	Sep 21, 2020
GSE103926	Genome-wide maps of H3K9me3 with tethered heterochromatin machinery	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	6	TDF TXT SRA Run Selector	Jordan David Gessaman	Sep 16, 2017
GSE104019	Telomere repeats induce domains of H3K27 methylation in Neurospora	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Neurospora crassa	34	BEDPE TDF TSV TXT SRA Run Selector	Eric Selker	Dec 29, 2017
GSE118495	ASH-1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	18	BED BIGWIG CSV TDF TXT SRA Run Selector	Vincent T Bicocca	Aug 14, 2018
GSE121333	Context dependent Histone H3 Lysine 4 methylation is necessary for repression and is a requisite modification for facultative heterochromatin at distinct loci [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	20	BED SRA Run Selector	William J. Belden	Nov 30, 2018
GSE121356	Context dependent Histone H3 Lysine 4 methylation is necessary for repression and is a requisite modification for facultative heterochromatin at distinct loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	32		William J. Belden	Nov 30, 2018
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE134449	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	12	BIGWIG TDF SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE134452	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	20	BIGWIG IGV TAB TDF XLSX	Elizabeth Toomey Wiles	Oct 19, 2022
GSE137018	Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BED BIGWIG IGV TDF TXT SRA Run Selector	Eric U Selker	Aug 18, 2020