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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa
GSE61173	H3K9me3 ChIP-seq from Neurospora crassa wild type (WT) and dim-3 (severely reduced H3K9me3 levels) strains	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	2	TDF SRA Run Selector	Andrew David Klocko	Mar 22, 2015
GSE100770	Saturating the Neurospora crassa genome for defective in methylation (dim) mutants	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	3	TDF SRA Run Selector	Andrew David Klocko	Sep 21, 2020
GSE269228	A Constitutive Heterochromatic Region Shapes Genome Organization and Impacts Gene Expression in Neurospora crassa [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	3	BEDGRAPH BIGWIG	Andrew David Klocko	Jun 10, 2024
GSE61175	Neurospora importin alpha compromises H3K9me3 and cytosine methylation levels through inappropriate localization of the heterochromatin machinery	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Neurospora crassa	5	TDF WIG	Andrew David Klocko	Mar 22, 2015
GSE71024	HiC of Wild Type Neurospora crassa and mutants deficient in heterochromatin formation	Genome binding/occupancy profiling by high throughput sequencing Other	Neurospora crassa	5	FASTA GTF TDF TXT SRA Run Selector	Andrew David Klocko	May 19, 2016
GSE103926	Genome-wide maps of H3K9me3 with tethered heterochromatin machinery	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	6	TDF TXT SRA Run Selector	Jordan David Gessaman	Sep 16, 2017
GSE216517	ChIP-seq H4 and AcH4 in WT and del.ncu09482	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	6	BEDGRAPH	Bin Wang	Oct 26, 2022
GSE81129	Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	7	IGV TDF SRA Run Selector	Michael R Rountree	Jan 01, 2017
GSE140787	Identification of a novel fungal PRC2 accessory subunit	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	8	BIGWIG TXT SRA Run Selector	Eric Selker	Mar 30, 2020
GSE261325	The RPD3L deacetylation complex is required for facultative heterochromatin repression in Neurospora crassa [Mnase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	8	BW	Hideki Tanizawa	Aug 21, 2024
GSE143603	A Light-Inducible Strain for Genome-Wide Histone Turnover Profiling in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	10	BED BIGWIG SRA Run Selector	Eric U Selker	Jan 01, 2021
GSE134449	The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	12	BIGWIG TDF SRA Run Selector	Elizabeth Toomey Wiles	Oct 19, 2022
GSE141676	Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa Saccharomyces cerevisiae Schizosaccharomyces pombe	13	FASTA GTF SGR SRA Run Selector	Jeffrey N McKnight	Dec 10, 2019
GSE82222	Neurospora crassa genome organization requires subtelomeric facultative heterochromatin	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Neurospora crassa	16	BCF FASTA GTF TDF TXT XLSX SRA Run Selector	Andrew David Klocko	Oct 27, 2016
GSE128317	Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BIGWIG TXT SRA Run Selector	Elizabeth Toomey Wiles	Apr 15, 2020
GSE137018	Loss of Lysine-Specific Demethylase 1 (LSD1) Drives Aberrant Heterochromatin Formation in Neurospora crassa	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Third-party reanalysis	Neurospora crassa	16	BED BIGWIG IGV TDF TXT SRA Run Selector	Eric U Selker	Aug 18, 2020
GSE118495	ASH-1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	18	BED BIGWIG CSV TDF TXT SRA Run Selector	Vincent T Bicocca	Aug 14, 2018
GSE154497	Chromatin accessibility profiling in Neurospora crassa reveals features associated with accessible and inaccessible chromatin	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	18	BW SRA Run Selector	Zachary A Lewis	Nov 12, 2020
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE232933	Histone deacetylation and cytosine methylation are required for the normal compartmentalization of heterochromatin in the genome organization of Neurospora crassa [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	19	BEDGRAPH BIGWIG BW	Andrew David Klocko	Jul 03, 2023