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16 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli			GFF
GSE150240	The Fur Pan-regulon in E. coli shows diversity in strain-specific sets of target genes	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7 Salmonella enterica	36		GFF SRA Run Selector	Ye Gao	Aug 04, 2023
GSE158683	DeepTFactor, a deep learning-based tool for the identification of transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	6		GFF SRA Run Selector	Ye Gao	Oct 09, 2020
GSE181770	A chromatin immunoprecipitation database for prokarytic organisms [fur]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae Salmonella enterica Shigella flexneri Yersinia pseudotuberculosis	14		GFF SRA Run Selector	Ye Gao	Aug 15, 2021
GSE182079	A chromatin immunoprecipitation database for prokarytic organisms	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Klebsiella pneumoniae Pseudomonas putida Salmonella enterica Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Shigella flexneri Staphylococcus aureus Yersinia pseudotuberculosis	102		GFF	Ye Gao	Aug 17, 2021
GSE223483	The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	4		GFF	Ye Gao	Aug 04, 2023
GSE65641	Systems approach elucidates convoluted transcriptional regulation on carbon metabolism [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	12		GFF SRA Run Selector	Donghyuk Kim	Apr 18, 2018
GSE65643	Systems approach elucidates convoluted transcriptional regulation on carbon metabolism	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	24		GFF	Donghyuk Kim	Apr 18, 2018
GSE65710	Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	6		GFF SRA Run Selector	Donghyuk Kim	Aug 13, 2015
GSE65712	Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	14		GFF	Donghyuk Kim	Aug 13, 2015
GSE66482	Decoding genome-wide GadEWX transcriptional regulatory networks reveals a multifaceted cellular response to acid stress in Escherichia coli	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	16		GFF	Donghyuk Kim	Aug 11, 2015
GSE64847	Integrated analysis of molecular and systems level function of the Crp regulon [ChIP-exo]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	43		GFF SRA Run Selector	Haythem Latif	Jan 09, 2017
GSE64849	Integrated analysis of molecular and systems level function of the Crp regulon	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	68		GFF	Haythem Latif	Jan 09, 2017
GSE189206	Genome-wide promoter assembly mechanisms in E. coli measured at single base resolution	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	50		GFF	B. Franklin Pugh	Feb 21, 2022
GSE162594	Genome-wide maps of CRP(T168P)-binding change in Escherichia coli W	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	5		GFF SRA Run Selector	Sang Woo Seo	Aug 23, 2021
GSE162597	CRP(T168P) and AC(S254R) mutant strain of E. coli W	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli	14		GFF HTML TXT	Sang Woo Seo	Aug 23, 2021
GSE117186	Topo-Seq application for topoisomerases binding sites identification with a single-nucleotide resolution	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	31		FASTA GFF TAR XLSX SRA Run Selector	Dmitry Sutormin	Jul 17, 2018