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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster		GFF
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE141377	CDK12 and CDK13	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	124	BIGWIG BW CSV GFF TDF TSV	Zheng Fan	Apr 29, 2020
GSE224967	Chromatin state transitions in the Drosophila intestinal lineage reveal principles of cell type specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	63	BEDGRAPH GFF NARROWPEAK	Katarzyna Siudeja	Oct 26, 2023
GSE163697	Decoding gene regulation in the fly brain	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	58	BED BW GFF NARROWPEAK RDATA RDS SRA Run Selector	Stein Aerts	Aug 10, 2021
GSE111000	Ultra-parallel ChIP-seq by barcoding of intact nuclei	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	44	BED BW GFF NARROWPEAK SRA Run Selector	Thomas Manke	Mar 06, 2018
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE199146	NuRD independent Mi2 activity represses ectopic gene expression during neuronal maturation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	32	BW GFF	Tony David Southall	Nov 23, 2022
GSE139888	Cell specific profiling of neurons expressing differnet neurotransmitters during Drosophila development	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	31	GFF SRA Run Selector	Tony David Southall	Nov 05, 2019
GSE142112	Characterisation of Cap-G binding and its role in post-mitotic neurons in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	24	BW GFF SRA Run Selector	Tony David Southall	Dec 17, 2019
GSE20369	Binding site turnover produces pervasive quantitative changes in TF binding between closely related Drosophila species	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila yakuba	20	GFF TXT	Michael Eisen	Feb 18, 2010
GSE104801	CATaDa chromatin accessiblity data for neural and midgut cell types.	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	17	GFF SRA Run Selector	Gabriel Aughey	Feb 20, 2018
GSE149718	Identification of genome-wide binding sites of Psi, Myc and Pol in Drosophila imaginal wing discs using Targeted DamID	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	16	BEDGRAPH GFF SRA Run Selector	Olga Zaytseva	Jun 30, 2020
GSE101814	Drosophila intestinal stem and progenitor cells are major sources and regulators of homeostatic niche signals	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	14	GFF SRA Run Selector	Owen Marshall	Nov 05, 2018
GSE50769	Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	13	BED GFF PAIR TXT	Chin-Tong Ong	Sep 15, 2013
GSE41354	Distribution of insulator proteins CP190, dCTCF, Su(Hw) and Mod(mdg4)2.2 in Drosophila S2 cells in the presence or absence of dPARP inhibitor 3AB	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	10	BED GFF SRA Run Selector	Chin-Tong Ong	Sep 15, 2013
GSE166116	Genome-wide binding profiles of KDM5 in Drosophila GMCs and immature neurons	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	9	BEDGRAPH GFF XLSX SRA Run Selector	Hayden A. M. Hatch	Mar 17, 2021
GSE159632	FlyORF-TaDa allows rapid generation of new lines for in vivo cell-type specific profiling of protein-DNA interactions in Drosophila melanogaster	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	8	BEDGRAPH GFF SRA Run Selector	Owen Marshall	Jan 31, 2021
GSE163570	Profiling of RNA Pol II occupancy in adult Drosophila terminal tracheal cell using TaDa (Targeted DamID) in context of homeostasis or damaged intestine	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	8	GFF SRA Run Selector	Tony David Southall	Dec 21, 2020
GSE225409	Dedifferentiation-derived neural stem cells exhibit perturbed temporal progression	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	8	BEDGRAPH GFF	Owen Marshall	May 24, 2023
GSE188643	A Notch-dependent transcriptional mechanism controls expression of temporal patterning factors in Drosophila medulla	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	6	BEDGRAPH GFF	Xin Li	Aug 10, 2022