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1488 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster		TXT
GSE114209	Collaborative repressive action of the antagonistic ETS transcription factors Pointed and Yan fine-tunes gene expression to confer robustness in Drosophila	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	21	TXT WIG	Jemma L. Webber	May 08, 2018
GSE159174	Effects of temperature change within the readily tolerated range on transcription and DNA accessibility in the Drosophila S2R+ cell line	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	92	TXT	Christian F. Lehner	Sep 13, 2021
GSE15292	Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	936	BED BEDGRAPH TXT	Kevin P. White	Mar 20, 2009
GSE17697	Complex patterns of accessibility discriminate sites of PcG repression, H4K16 acetylation and replication initiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Drosophila melanogaster	11	CEL TXT SRA Run Selector	Michaela Schwaiger	Mar 16, 2010
GSE18572	Discrete genomic domains exhibit co-occurrence of H3K9me3 and H3K27me3 histone modifications throughout Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	49	BED BEDGRAPH TXT	Kevin P. White	Oct 16, 2009
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Postia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE24449	Genome-wide comparative ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	21	BED TXT WIG SRA Run Selector	Kevin P. White	Nov 08, 2012
GSE28833	The Polycomb group mutant esc leads to augmented the levels of paused Pol II in the Drosophila embryo.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	18	TXT	David Anthony Hendrix	Jun 15, 2011
GSE31900	Developmental Control of Gene Copy Number by Repression of Replication Initiation and Fork Progression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by genome tiling array	Drosophila melanogaster	16	BED TXT WIG	Terry L. Orr-Weaver	Oct 18, 2011
GSE36450	The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	16	TXT	Tobias Kockmann	Feb 06, 2013
GSE38727	A common set of DNA regulatory elements shapes Drosophila appendages	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	22	BED TXT WIG XLS SRA Run Selector	Daniel J McKay	Nov 07, 2013
GSE40739	Genome-wide quantitative enhancer activity maps identified by STARR-seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens	18	TXT SRA Run Selector	Daniel Gerlach	Jan 17, 2013
GSE43130	Genome-wide binding of Yki and GAF in embryos and wing imaginal discs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	18	TXT	Kevin P. White	Feb 07, 2013
GSE46009	A genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	37	BED TXT SRA Run Selector	Felix Muerdter	May 09, 2013
GSE47006	Expression profile and RNA Polymerase II occupancy of transposable elements among knock down of the piRNA pathway components in OSCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	10	TXT SRA Run Selector	Yuka W. Iwasaki	Aug 01, 2013
GSE47691	Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	20	TXT SRA Run Selector	Daria Shlyueva	Mar 27, 2014
GSE49480	Identifying targets of DSX with ChIP-seq, DamID-seq and DamID-chip and transcriptional response to DSX isoform switch	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	41	BEDGRAPH MAP PAIR TXT	Brian Oliver	Oct 30, 2014
GSE50773	Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Drosophila pseudoobscura Drosophila virilis Drosophila yakuba	42	GTF TXT	Mathilde PARIS	Sep 12, 2013
GSE55824	The Rhino-Deadlock-Cutoff complex licenses non-canonical transcription of dual-strand piRNA clusters in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	36	TXT SRA Run Selector	Fabio Mohn	Jun 08, 2014
GSE59610	Trans-generationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	24	BW TXT WIG	Adrien Le Thomas	Jul 26, 2014