GEO Browser - GEO

Series

Samples

Platforms

DataSets

244 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Danio rerio
GSE32880	Conserved Function of lincRNAs in Vertebrate Embryonic Development Despite Rapid Sequence Evolution	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	16	BAM BED BW SRA Run Selector	Igor Ulitsky	Dec 22, 2011
GSE20600	Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	BED WIG SRA Run Selector	Lihua Julie Zhu	Feb 25, 2011
GSE32483	Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	24	BED WIG SRA Run Selector	Ozren Bogdanovic	May 08, 2012
GSE35050	Extensive conservation of ancient microsynteny across metazoans	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	1	BED SRA Run Selector	Ozren Bogdanovic	Jun 21, 2012
GSE41458	Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	BED TXT SRA Run Selector	Vibhor Kumar	Feb 27, 2014
GSE48254	A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	7	BED BW SRA Run Selector	Shaun Mahony	Dec 02, 2013
GSE70847	Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	5	BED SRA Run Selector	Ozren Bogdanovic	Jul 22, 2015
GSE71434	Allelic reprogramming of the histone modification H3K4me3 in early mammalian development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus	57	BED TXT SRA Run Selector	Bingjie Zhang	Sep 15, 2016
GSE74231	Enhancers reside in a unique epigenetic environment during early zebrafish development [ChIP-seq & ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	7	BED COD SRA Run Selector	lucas kaaij	Nov 06, 2015
GSE74617	Enhancers reside in a unique epigenetic environment during early zebrafish development	Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	24	BED COD WIG	lucas kaaij	Nov 06, 2015
GSE75734	Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	18	BED WIG SRA Run Selector	Yuvia Alheli Perez Rico	Nov 14, 2016
GSE76740	Abundant DNA 6mA methylation during early embryogenesis of zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	13	BED SRA Run Selector	Guan-Zheng Luo	Oct 10, 2016
GSE77921	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	BED TXT SRA Run Selector	Leonard Zon	Feb 08, 2021
GSE77923	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	12	BED TXT	Leonard Zon	Feb 08, 2021
GSE81862	Genome-wide maps of histone variant H3.3 occupancy in zebrafish cardiomyocytes [H33]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	10	BED SRA Run Selector	Michael Tolstorukov	Mar 07, 2017
GSE81863	Genome-wide maps of histone variant H3.3 occupancy in zebrafish cardiomyocytes [H3K27Ac]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	2	BED SRA Run Selector	Michael Tolstorukov	Mar 07, 2017
GSE81893	Genome-wide maps of histone variant H3.3 occupancy in zebrafish cardiomyocytes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	16	BED	Michael Tolstorukov	Mar 07, 2017
GSE84600	ChIP-seq analysis of Rad21 binding during genome activation	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	14	BED SRA Run Selector	Michael Meier	Dec 01, 2017
GSE84602	Cohesin facilitates zygotic genome activation in Zebrafish	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	61	BED	Michael Meier	Dec 01, 2017
GSE94933	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells [zebrafish]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	7	BED BW TXT SRA Run Selector	John Rawls	May 02, 2017