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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterGenome binding/occupancy profiling by high throughput sequencing Remove filterDanio rerio Remove filterBED
GSE35050
Extensive conservation of ancient microsynteny across metazoans
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
1 Ozren Bogdanovic Jun 21, 2012
GSE133990
FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
1 Dietmar Rieder Jul 18, 2019
GSE81863
Genome-wide maps of histone variant H3.3 occupancy in zebrafish cardiomyocytes [H3K27Ac]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
2 Michael Tolstorukov Mar 07, 2017
GSE99566
c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish [ATAC-Seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
2 Leonard Zon Jun 01, 2019
GSE100286
Atac-seq of 2.5 hpf zebrafish embryos
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
2 Michael Meier Dec 01, 2017
GSE41458
Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 Vibhor Kumar Feb 27, 2014
GSE121988
5hmC (48hpf WT dissected heart) 5hMe-Bead-Integrated Click-seq (5hMe-BIC-seq)
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 Heng Pan Jan 15, 2019
GSE133437
Genome-wide maps of HPSH-CTCF binding in prim-5 stage zebrafish embryos
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 Yuvia Alheli Perez Rico Mar 30, 2020
GSE140240
ATAC-seq profile of zebrafish periderm at 4-somite stage
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 Robert Cornell Jan 13, 2020
GSE150189
Analysis of gene network branching during optic cup morphogenesis in zebrafish
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 Lorena Buono May 06, 2021
GSE70847
Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos
  • Link icon Danio rerio
5 Ozren Bogdanovic Jul 22, 2015
GSE20600
Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
6 Lihua Julie Zhu Feb 25, 2011
GSE77921
SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [ChIP-Seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
6 Leonard Zon Feb 08, 2021
GSE120531
Identification and functional analysis of yap1b: a new Yap family member in teleosts that evolved a divergent transcriptional activation domain.
  • Genome binding/occupancy profiling by high throughput sequencing
6 Javier Vázquez-Marín Jun 01, 2019
GSE137987
Chronic glucocorticoid exposure in early development leads to neuroendocrine, metabolic, and immune dysregulation in adult zebrafish
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
6 Benjamin L King Oct 28, 2019
GSE178559
Identification of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&Tag
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
6 Fanju Meng Feb 15, 2022
GSE179521
Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate [ATAC-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
6 Nadia Mercader Mar 08, 2022
GSE48254
A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
7 Shaun Mahony Dec 02, 2013
GSE74231
Enhancers reside in a unique epigenetic environment during early zebrafish development [ChIP-seq & ATAC-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Other
  • Link icon Danio rerio
7 lucas kaaij Nov 06, 2015
GSE94933
Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells [zebrafish]
  • Link icon Danio rerio
7 John Rawls May 02, 2017