238 series
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Accession Title Series type(s) Organism(s) Samples GDS Supplementary Contact Release date
Remove filtersFilter Remove filterGenome binding/occupancy profiling by high throughput sequencing Remove filterDanio rerio
GSE213360
A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma
40 Leonard Zon Jun 13, 2024
GSE268179
Large-scale screen of novel zebrafish retinal ganglion cell ablation model reveals genetic regulation of retinal regeneration is context specific
  • Link icon Danio rerio
20 Kevin Emmerich May 27, 2024
GSE175444
Distinctive roles for the chromatin remodeling ATPases Brg1 and Brm in early zebrafish embryos [ChIP-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
23 Bradley R Cairns May 24, 2024
GSE175447
Distinctive roles for the chromatin remodeling ATPases Brg1 and Brm in early zebrafish embryos
  • Link icon Danio rerio
28 Bradley R Cairns May 24, 2024
GSE267332
Integration of ATAC and RNA-Sequencing identifies chromatin and transcriptomic signatures in classical and non-classical zebrafish osteoblasts and indicates mechanisms of entpd5a regulation [ATAC]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
12 Kleio Petratou-Busswinkel May 14, 2024
GSE261538
CUT&Tag Reveals a Return of Embryonic H3K4me3 Patterns During Zebrafish Adult Tail Fin Regeneration (CUT&Tag)
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
18 Phu T Duong May 01, 2024
GSE261540
CUT&Tag Reveals a Return of Embryonic H3K4me3 Patterns During Zebrafish Tail Fin Regeneration
  • Link icon Danio rerio
20 Phu T Duong May 01, 2024
GSE245156
Tissue-resident trained immunity in hepatocytes protects septic-liver injury in zebrafish
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 dahai Yang Apr 25, 2024
GSE250263
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ATAC-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
14 Aurelie Hintermann Apr 17, 2024
GSE250267
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS
34 Aurelie Hintermann Apr 17, 2024
GSE250367
EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]
3 Aurelie Hintermann Apr 17, 2024
GSE243256
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
535 Keyong Sun Apr 14, 2024
GSE215986
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [scATAC-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 LI QIAN Feb 26, 2024
GSE215988
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration
  • Genome binding/occupancy profiling by high throughput sequencing
  • Other
  • Link icon Danio rerio
12 LI QIAN Feb 26, 2024
GSE248538
Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [ATAC-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
4 LI QIAN Feb 26, 2024
GSE211677
Leveraging chromatin state transitions for regulatory networks identification in heart regeneration
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
50 Gergana Dobreva Jan 25, 2024
GSE232043
Construction of zebrafish chromatin accessibility landscape at a single-cell level using CH-ATAC-seq
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
8 Guoji Guo Jan 15, 2024
GSE232162
Construction of a cross-species chromatin accessibility landscape at a single-cell level using CH-ATAC-seq
  • Genome binding/occupancy profiling by high throughput sequencing
13 Guoji Guo Jan 15, 2024
GSE237444
Anp32e protects against accumulation of H2A.Z at Sox motif containing promoters during zebrafish gastrulation
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
9 Fanju Meng Dec 24, 2023
GSE198310
Cebp1 and Cebpβ transcriptional axis controls eosinophilopoiesis in zebrafish [ChIP-seq]
  • Genome binding/occupancy profiling by high throughput sequencing
  • Link icon Danio rerio
8 Gaofei Li Dec 11, 2023