GEO Browser - GEO

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34 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta		SRA Run Selector
GSE188879	ATAC-seq profiling in CD14+ cells isolated from rhesus macaques vaccinated with V1-deleted DNA/ALVAC/gp120 vaccine [study 2]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	24	NARROWPEAK SRA Run Selector	Massimiliano Bissa	Jan 06, 2023
GSE24111	Gene expression differences among primates are associated with changes in a histone epigenetic modification	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	21	TXT SRA Run Selector	Carolyn Elizabeth Cain	Feb 15, 2011
GSE160247	Regulatory diversity contributes to divergent transcriptional response to dietary changes in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	20	BW SRA Run Selector	Kevin Richard Costello	Apr 01, 2021
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE129034	Comparison of chromatin accessibility between human and non-human primates	Genome binding/occupancy profiling by high throughput sequencing	Gorilla gorilla Homo sapiens Macaca mulatta Pan troglodytes Pongo pygmaeus	15	BED SRA Run Selector	Gregory Crawford	Oct 11, 2019
GSE67978	Epigenomic annotation of gene regulatory alterations during evolution of the primate brain	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	98	BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Jan 13, 2016
GSE130871	Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Pan troglodytes	49	BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Dec 20, 2019
GSE158931	Evolution of regulatory signatures in primate cortical neurons at cell-type resolution [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Pan troglodytes	32	BW XLSX SRA Run Selector	Stella Dracheva	Oct 03, 2020
GSE120271	RNA-seq and ChIP-seq for human-specific regulation of neural maturation identified by cross-primate transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gorilla Homo sapiens Macaca mulatta Pan paniscus Pan troglodytes	79	BED BEDGRAPH TXT SRA Run Selector	Fred H Gage	Sep 20, 2020
GSE24538	Ab initio identification of transcription start sites (TSSs) in the Rhesus macaque genome by histone modification and RNA-Seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Macaca mulatta	3	BED BEDGRAPH TXT SRA Run Selector	Dali Han	Oct 19, 2010
GSE41128	Stress-associated H3K4 methylation accumulates during postnatal development and aging of Rhesus macaque brain	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	5	BED TXT SRA Run Selector	Dali Han	Apr 01, 2013
GSE116854	Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	10	WIG SRA Run Selector	Yoonhee Jung	Feb 28, 2019
GSE130570	Chromatin Accessibility and Transcription Dynamics During In Vitro Astrocyte Differentiation of Huntington’s Disease Monkey Pluripotent Stem Cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	40	BW SRA Run Selector	Isaac Kremsky	Jun 08, 2020
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE106578	Nucleosome profiles for mammalian tissues [Mnase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Sus scrofa Tupaia belangeri	21	BW SRA Run Selector	Yumei Li	Aug 07, 2018
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE128537	Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	449	BW GTF TXT SRA Run Selector	keying Lu	Dec 30, 2019
GSE95793	Sirtuin 1-chromatin-binding dynamics point to a common mechanism regulating microglial inflammatory targets in SIV infection and in the aging brain	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	8	BW SRA Run Selector	Maria Cecilia Marcondes	Mar 22, 2017
GSE159046	Stronger induction of trained immunity by mucosal BCG or MTBVAC vaccination	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	6	BIGWIG SRA Run Selector	Joost Martens	Jan 27, 2021
GSE175679	Distinct nuclear compartment-associated genome architecture in the developing mammalian brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	62	BED BW H5 SRA Run Selector	Tomasz Nowakowski	May 28, 2021