GEO Browser - GEO

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34 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta		SRA Run Selector
GSE24111	Gene expression differences among primates are associated with changes in a histone epigenetic modification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	21	TXT SRA Run Selector	Carolyn Elizabeth Cain	Feb 15, 2011
GSE24538	Ab initio identification of transcription start sites (TSSs) in the Rhesus macaque genome by histone modification and RNA-Seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	3	BED BEDGRAPH TXT SRA Run Selector	Dali Han	Oct 19, 2010
GSE42413	The Evolution of Lineage-Specific Regulatory Activities in the Human Embryonic Limb	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	56	BAM BED BW SRA Run Selector	Justin Cotney	Jul 02, 2013
GSE60269	Epigenetic modifications are associated with inter-species gene expression variation in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	98	BED SRA Run Selector	Xiang Zhou	Nov 09, 2014
GSE68507	Cross-species comparison of epigenetic poising in the mammalian germ line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Gallus gallus Homo sapiens Macaca mulatta Monodelphis domestica Mus musculus	87	TXT SRA Run Selector	Bluma J Lesch	May 07, 2016
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE120271	RNA-seq and ChIP-seq for human-specific regulation of neural maturation identified by cross-primate transcriptomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gorilla Homo sapiens Macaca mulatta Pan paniscus Pan troglodytes	79	BED BEDGRAPH TXT SRA Run Selector	Fred H Gage	Sep 20, 2020
GSE128537	Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	449	BW GTF TXT SRA Run Selector	keying Lu	Dec 30, 2019
GSE130570	Chromatin Accessibility and Transcription Dynamics During In Vitro Astrocyte Differentiation of Huntington’s Disease Monkey Pluripotent Stem Cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	40	BW SRA Run Selector	Isaac Kremsky	Jun 08, 2020
GSE130871	Hominin-specific regulatory elements selectively emerged in oligodendrocytes and are disrupted in autism patients	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Pan troglodytes	49	BW NARROWPEAK TXT SRA Run Selector	Menno P Creyghton	Dec 20, 2019
GSE135791	Pachytene piRNA Genes Are Rapidly Diverging Among Modern Humans	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	72	BW NARROWPEAK TXT SRA Run Selector	Tianxiong Yu	Dec 23, 2019
GSE147724	Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus	19	BW SRA Run Selector	Tianxiong Yu	Oct 24, 2020
GSE159347	Analysis of developmental imprinting dynamics in primates using SNP-free methods to identify imprinting defects in cloned placenta	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Macaca fascicularis Macaca mulatta	29	TXT WIG SRA Run Selector	Wenhao Zhang	Sep 07, 2021
GSE160247	Regulatory diversity contributes to divergent transcriptional response to dietary changes in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	20	BW SRA Run Selector	Kevin Richard Costello	Apr 01, 2021
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE166104	The Testis-Specific Transcription Factor TCFL5 Responds to A-MYB to Elaborate Male Meiotic Program in Mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Macaca mulatta Mus musculus	57	BW SRA Run Selector	Tianxiong Yu	Jan 11, 2023
GSE175679	Distinct nuclear compartment-associated genome architecture in the developing mammalian brain	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus	62	BED BW H5 SRA Run Selector	Tomasz Nowakowski	May 28, 2021
GSE41128	Stress-associated H3K4 methylation accumulates during postnatal development and aging of Rhesus macaque brain	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	5	BED TXT SRA Run Selector	Dali Han	Apr 01, 2013
GSE54907	Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection [Dnase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Macaca mulatta Pan troglodytes	15	BIGWIG SRA Run Selector	Yoichiro Shibata	Feb 13, 2014
GSE60838	Evolutionary changes in promoter and enhancer activity during corticogenesis (non-human)	Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta Mus musculus	39	BED BW SRA Run Selector	Steven K Reilly	Mar 06, 2015