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9825 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		BED
GSE244840	Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED BW	Wilbert Zwart	Mar 27, 2024
GSE71780	Functional interdependency of BRD4 and DOT1L in MLL leukaemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	33	BED	Mark Dawson	Jun 12, 2016
GSE185066	Local euchromatin enrichment in lamina-associated domains anticipates their re-positioning in the adipogenic lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	82	BED BEDGRAPH BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Philippe Collas	Mar 21, 2022
GSE73783	Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BED SRA Run Selector	Joanna Achinger-Kawecka	Apr 04, 2016
GSE34791	"Calling Cards" for DNA-binding proteins in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED TXT SRA Run Selector	David Mayhew	Dec 31, 2011
GSE232895	27 Hydroxycholesterol represses G9a expression via Estrogen Receptor alpha in breast cancer	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BED	Arumugam Rajavelu	Sep 21, 2023
GSE136090	3D genome landscapes of primary effusion lymphoma cell lines link super-enhancers to dependency factors	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	17	BED TXT SRA Run Selector	Mingxiang Teng	Oct 06, 2020
GSE112346	4C-seq of insulin promoter, knockdown of INS promoter activity and Genome-wide maps of chromatin state in EndoC-βH1 Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BED	Gary Felsenfeld	Apr 06, 2018
GSE151818	5-hydroxymethylcytosine is Dynamically Regulated During Forebrain Organoid Development and Prematurely Altered in Forebrain Organoids of Alzheimer’s Disease Patients	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	48	BED DIFF NARROWPEAK SRA Run Selector	Janise Nichole Kuehner	Apr 27, 2021
GSE47592	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer	Expression profiling by array Methylation profiling by array Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	137	BED	Chandra Chilamakuri	Feb 03, 2015
GSE47590	5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BED SRA Run Selector	Chandra Chilamakuri	Feb 03, 2015
GSE97992	5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	29	BED BW	Jia Li	Apr 18, 2018
GSE97989	5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED SRA Run Selector	Jia Li	Apr 18, 2018
GSE73576	82-kDa ChAT and SATB1 ChIP-seq after vehicle or amyloid-beta exposure	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED SRA Run Selector	Sandeep K Gill	Apr 11, 2016
GSE124667	A CRISPR-Cas9 screen identifies essential CTCF anchor sites for Estrogen Receptor-driven breast cancer cell proliferation	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	28	BED SRA Run Selector	Yongsoo Kim	Jan 04, 2020
GSE64243	A ChIP-seq spike-in method enables detection of global histone modification changes across the genome	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED SRA Run Selector	Suchit Jhunjhunwala	Jan 31, 2016
GSE149268	A Chromatin Accessibility Atlas of the Developing Human Telencephalon	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BED BIGWIG NARROWPEAK	John Rubenstein	Apr 25, 2020
GSE199801	A CpG island-encoded mechanism protects genes from premature transcription termination [SET1_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	60	BED BW CSV	Emilia Dimitrova	Dec 22, 2022
GSE128952	A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED BEDGRAPH HIC NARROWPEAK TXT SRA Run Selector	Sizun Jiang	Dec 22, 2022
GSE124197	A Genome-wide CRISPR-Based Screen Identifies KAT7 as a Senescence Driver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	71	BED BIGWIG TXT SRA Run Selector	Yuxuan Zheng	Oct 09, 2020