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9825 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		BED
GSE125982	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Homo sapiens	36	BED BROADPEAK NARROWPEAK SRA Run Selector	Angela Simeone	Jun 05, 2020
GSE237051	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus laevis Mus musculus Homo sapiens	28	BED BEDGRAPH HIC	Roman R Stocsits	Oct 25, 2023
GSE136703	Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits	Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Homo sapiens	210	BED BW	Carl G de Boer	Feb 11, 2020
GSE62777	Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	317	BED TDF TXT	Shannan J Ho Sui	Jul 16, 2015
GSE66324	Nitric oxide regulates gene expression in cancers by controlling histone posttranslational modifications	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Non-coding RNA profiling by array	synthetic construct Homo sapiens	22	BED BW CEL	Douglas David Thomas	Nov 05, 2015
GSE81026	Cis Regulatory Element Scan by Tiling-deletion and Sequencing	Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Homo sapiens	23	BED BW PDF TAR SRA Run Selector	Bing Ren	Apr 17, 2017
GSE139417	Functional enhancers shape extrachromosomal oncogene amplifications	Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Homo sapiens	20	BED BW TXT	Peter Scacheri	Nov 25, 2019
GSE188405	A cis-regulatory lexicon of DNA motif combinations mediating cell type-specific gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Homo sapiens	90	BED CSV TXT	Margaret Guo	Aug 17, 2022
GSE247432	Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	synthetic construct Homo sapiens	53	BED BIGWIG TXT	Lu Bai	Nov 09, 2023
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Sus scrofa Mus musculus Homo sapiens	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE84474	Cut-and-Run in situ factor profiling maps DNA binding and 3D contact sites at high resolution	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Homo sapiens	126	BED BEDGRAPH RTF SRA Run Selector	Jorja Henikoff	Dec 30, 2016
GSE110502	Characterizing protein-DNA binding event subtypes in ChIP-exo data	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Homo sapiens	9	BED SRA Run Selector	Shaun Mahony	Feb 13, 2018
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE38571	Integrated transcriptomic and epigenomic analysis of primary human lung cell differentiation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Homo sapiens	38	BED TXT	Crystal N Marconett	Apr 15, 2013
GSE141278	Transcription regulation of SNCA by dystonia type 6 gene product THAP1	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Rattus norvegicus Homo sapiens	37	BED BEDGRAPH BIGWIG TSV	Fubo Cheng	Sep 28, 2022
GSE164361	Comparative Chromatin Dynamics and Expression Profiles of Neural Progenitor and Definitive Endoderm Lineage Differentiation in Two Mammalian Species	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Homo sapiens	118	BED TXT SRA Run Selector	Seyed Ali Mortazavi	Feb 12, 2021
GSE167253	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus Homo sapiens	17	BED BW SRA Run Selector	Wei Wu	Mar 25, 2021
GSE167259	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Rattus norvegicus Mus musculus Homo sapiens	109	BED BW	Wei Wu	Mar 25, 2021
GSE178733	Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits [snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Homo sapiens	12	BED BROADPEAK BW	Stephen C.J. Parker	Jun 23, 2021
GSE178735	Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus Homo sapiens	19	BED BROADPEAK BW	Stephen C.J. Parker	Jun 23, 2021