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8119 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		BIGWIG
GSE268035	STAG2 Mutations Reshape the Cohesin-Structured Spatial Chromatin Architecture to Drive Gene Regulation in Acute myeloid Leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	541	BIGWIG MTX TSV TXT	Alexander Fischer	Jun 18, 2024
GSE271090	Centralized control of dynamic gene regulatory circuits governs human T cell rest and activation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	443	BED BEDGRAPH BIGWIG NARROWPEAK	Alexander Marson	Oct 14, 2024
GSE34941	Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	428	BED BIGWIG PAIR	Huimin Geng	Nov 27, 2012
GSE31477	ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	426	BIGWIG NARROWPEAK TXT SRA Run Selector	ENCODE DCC	Aug 30, 2011
GSE32465	Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	399	BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Sep 29, 2011
GSE121723	Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	364	BED BIGWIG BW CEL	Bernhard Radlwimmer	Nov 05, 2018
GSE150199	Activation of clustered IFNγ target genes drives cohesin-controlled transcriptional memory	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	364	BIGWIG	Wojciech Siwek	Oct 25, 2020
GSE268031	STAG2 Mutations Reshape the Cohesin-Structured Spatial Chromatin Architecture to Drive Gene Regulation in Acute myeloid Leukemia [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	299	BIGWIG TXT	Alexander Fischer	Jun 18, 2024
GSE167806	ChIP-seq and RNA-seq data for Glioma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	298	BIGWIG TXT	ARIJIT PANDA	Sep 22, 2022
GSE29611	Histone Modifications by ChIP-seq from ENCODE/Broad Institute	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	296	BAM BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 02, 2011
GSE241347	Chromatin-associated LTR RNA m5C oxidation by TET2 regulates leukemogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	291	BED BIGWIG BROADPEAK NARROWPEAK TXT	Xiaoyang Dou	Jul 24, 2024
GSE249492	ARID1A regulates DSB repair through chromatin organization and its deficiency triggers DNA damage-mediated immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	280	BIGWIG BW TSV	Christoph Plass	Jun 12, 2024
GSE148185	Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	275	BEDGRAPH BIGWIG TXT VCF	Gustavo Agustín Ruiz Buendía	Apr 07, 2020
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014
GSE175752	Chromatin states and genomic organization impact local replication features and timing	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	252	BED BIGWIG	Fei Ji	Sep 27, 2021
GSE62742	Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	249	BEDPE BIGWIG NARROWPEAK TXT SRA Run Selector	Fabian Grubert	Aug 20, 2015
GSE124232	Pancreatic cancer prognosis is predicted by chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	225	BIGWIG	Sagar Chhangawala	Mar 31, 2021
GSE167804	ChIP-seq data for Glioma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	224	BIGWIG	ARIJIT PANDA	Sep 22, 2022
GSE233789	Targeting KAT6A/KAT6B dependencies in breast cancer with a novel selective, orally bioavailable KAT6 inhibitor, CTx-648/PF-9363	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	219	BIGWIG	Chi-Yeh Chung	Jun 05, 2023
GSE29692	DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	208	BAM BIGWIG BROADPEAK NARROWPEAK SRA Run Selector	ENCODE DCC	Jun 03, 2011