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29 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		GFF
GSE26097	Pluripotency Factors Regulate Definitive Endoderm Specification through Eomesodermin	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED GFF TXT SRA Run Selector	Matthew Trotter	Jan 25, 2011
GSE51621	Comprehensive Functional Annotation of 77 Prostate Cancer Risk Loci	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	GFF SRA Run Selector	Peggy J Farnham	Jan 28, 2014
GSE55270	ChIP-chip from HEK293-RPF-1 stable transfectants expressing the HA-tagged RPF-1 transcription factor	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	GFF PAIR	gabriele bucci	Sep 06, 2016
GSE19461	Activin/Nodal signalling controls divergent transcriptional networks in pluripotent and endoderm progenitors.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED GFF TXT SRA Run Selector	Matthew Trotter	Nov 11, 2011
GSE51726	Genome-wide Dnase-Seq profiles in Hodgkin's and non-Hodgkin's lymphoma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	GFF WIG SRA Run Selector	Pierre Daniel Cauchy	Sep 24, 2014
GSE38447	Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	GFF TXT SRA Run Selector	rui wang	Jun 05, 2012
GSE51814	Genome-wide DNase-Seq and methylation profiles in Hodgkin's and non-Hodgkin's lymphoma	Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	GFF WIG	Pierre Daniel Cauchy	Sep 24, 2014
GSE24398	Diverse roles and interactions of the SWI/SNF chromatin-remodeling complex revealed using global approaches	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	10	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE251754	Simultaneous profiling of full-length RNA transcripts and chromatin accessibility within single cells of human retinal organoids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	GFF H5 MTX TSV TXT	yuhua xiao	Jul 13, 2024
GSE60106	Global loss of DNA methylation uncovers intronic enhancers in genes	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	11	BED BW GFF SRA Run Selector	Peggy J Farnham	Sep 10, 2014
GSE21068	Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array Expression profiling by array	Homo sapiens Rattus norvegicus	12	GFF PAIR TXT WIG SRA Run Selector	Pei-Yin Hsu	Apr 29, 2010
GSE143313	BCL9/STAT3 Regulation of Transcriptional Enhancer Networks Promote DCIS Progression	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	GFF SRA Run Selector	Hanan Elsarraj	Jan 09, 2020
GSE162387	A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW GFF TXT SRA Run Selector	Bart Deplancke	Feb 08, 2022
GSE49345	Genomic distribution of human histone H1 subtypes	Expression profiling by array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	GFF PAIR TXT WIG	Albert Jordan	Feb 04, 2014
GSE70686	ChIP-seq of circadian transcription factors in MLL-AF9 leukemia cell lines	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BW GFF SRA Run Selector	Carl G de Boer	Jan 01, 2016
GSE199214	The steroid hormone estriol (E3) regulates epigenetic programming of fetal mouse brain and reproductive tract	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	24	BEDGRAPH CEL CHP GFF	Yuping Zhou	Mar 31, 2022
GSE59980	Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED GFF TXT SRA Run Selector	Matt Grimmer	Aug 01, 2014
GSE25021	[E-TABM-828] ChIP-Seq in human MCF7 and HEPG2 cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	32	GFF SRA Run Selector	European Bioinformatics Institute	Feb 05, 2011
GSE118514	CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED GFF NARROWPEAK TAB TXT XLS SRA Run Selector	Yu (Phoebe) Guo	Aug 15, 2018
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012