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230 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens		HIC
GSE215325	Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	30	BW HIC	Maria Valieva	Mar 31, 2023
GSE146901	3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	52	BEDPE BW H5 HIC TXT XLS SRA Run Selector	Hong Wu	Mar 20, 2021
GSE236253	3D gene regulation network in glioma ferroptosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	18	BW HIC TXT	Niannian Li	Oct 23, 2023
GSE163625	3D genomics across the tree of life reveals condensin II as a determinant of architecture type [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	HIC TXT SRA Run Selector	Angela Sedeno Cacciatore	Apr 26, 2021
GSE128952	A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED BEDGRAPH HIC NARROWPEAK TXT SRA Run Selector	Sizun Jiang	Dec 22, 2022
GSE241283	A MYOD-SKP2 axis boosts tumorigenesis in fusion negative rhabdomyosarcoma by preventing differentiation through p57Kip2 targeting	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BED HIC TXT	Matteo Cassandri	Aug 30, 2023
GSE245495	A MYOD-SKP2 axis boosts tumorigenesis in fusion negative rhabdomyosarcoma by preventing differentiation through p57Kip2 targeting [Hi-ChIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	2	HIC	Matteo Cassandri	Oct 16, 2023
GSE162148	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Canis lupus familiaris Cavia porcellus Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	553	HIC TXT	jin long	Apr 20, 2021
GSE162139	A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [human Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	HIC TXT SRA Run Selector	jin long	Apr 20, 2021
GSE235704	A SWI/SNF-dependent transcriptional regulation mediated by POU2AF2/C11orf53 at enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	50	BW HIC	Lu Wang	Jan 19, 2024
GSE155839	A Transcriptional State Driven by Yin Yang 1 Confers a Therapeutic Vulnerability in Glioblastoma Stem Cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	21	BW HIC	Zhixin Qiu	Jun 01, 2022
GSE232887	A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW COOL HIC NARROWPEAK	Marco Osterwalder	Jun 01, 2024
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023
GSE144643	A phase separation mechanism underlies development of cancer and aberrant organization of three-dimensional chromatin structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	HIC	Gang Greg Wang	Apr 19, 2021
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE250481	Aberrant upregulation of RUNX3 activates developmental genes to drive metastasis in gastric cancer.	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	20	BW HIC	Masaki Fukuyo	Dec 20, 2023
GSE115494	Allelic specificity of IGH-DUX4 translocation in acute lymphoblastic leukemia (ALL)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BW HIC	Jinghui Zhang	May 08, 2019
GSE115492	Allelic specificity of IGH-DUX4 translocation in acute lymphoblastic leukemia (ALL) [H3K27Ac HiChIP]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	HIC SRA Run Selector	Jinghui Zhang	May 08, 2019
GSE115491	Allelic specificity of IGH-DUX4 translocation in acute lymphoblastic leukemia (ALL) [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	HIC SRA Run Selector	Jinghui Zhang	May 08, 2019
GSE107447	Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	100	BED BW CSV HIC TXT	Yotam Drier	Oct 16, 2019