GEO Browser - GEO - NCBI

NCBI » GEO » Repository browser » SeriesLogin

Series

Samples

Platforms

DataSets

Summary | Advanced search

18 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens			MATRIX
GSE75070	RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14		BED MATRIX TSV TXT SRA Run Selector	Rasim Barutcu	Aug 23, 2016
GSE98015	Enhancer profiling in metastatic cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	72		BED BW MATRIX TXT	Sakari Vanharanta	Jun 12, 2018
GSE106690	Dynamic reorganization of nuclear architecture during human cardiogenesis	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	36		BED BEDGRAPH BW MATRIX NARROWPEAK TXT	Charles Murry	Jan 04, 2018
GSE120294	Cohesin HiChIP datasets of pluripotent and surface ectoderm cells with and without p63	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12		BED MATRIX TXT SRA Run Selector	Anthony E Oro	Nov 06, 2018
GSE124409	Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20		BED BW MATRIX TAR TXT SRA Run Selector	Mengfan Li	Nov 08, 2020
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92		BED BW COV MATRIX NARROWPEAK SF TAR TXT SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE133227	HiChIP data in A673 & TC71 Ewing cell lines (STAG1 and STAG2 knock-out)	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	35		BED MATRIX SRA Run Selector	Olivier Delattre	Apr 29, 2021
GSE133228	STAG2 promotes CTCF-anchored loop extrusion and cis-promoter and -enhancer interactions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens	336		BED CEL MATRIX TAB	Olivier Delattre	Apr 29, 2021
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175		BED BEDPE BW CPG MATRIX TXT SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE152900	KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	73		BEDPE MATRIX	Jan-Renier Moonen	May 28, 2021
GSE186206	Dynamic genome-wide interaction patterns elucidate the roles of Ki67 in chromatin organization	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	213		BED BW MATRIX TSV SRA Run Selector	Bas van Steensel	Oct 20, 2021
GSE193824	Genome wide enhancer loops (HiChIP) and 3-D high order chromatin features associated with EWS-FLI1 in Ewing Sarcoma. [HiC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7		MATRIX TXT SRA Run Selector	Rui Dong	Mar 16, 2023
GSE193830	Genome wide enhancer loops (HiChIP) and 3-D high order chromatin features associated with EWS-FLI1 in Ewing Sarcoma.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15		BEDPE BW MATRIX TXT	Rui Dong	Mar 16, 2023
GSE210504	N-acetyltransferase NAT10 Controls Cell Fates via RNA Cytidine Acetylation	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	44		BED BW MATRIX NARROWPEAK TXT	Yunkun Lu	Nov 11, 2023
GSE212979	EWS-WT1 fusion isoforms establish oncogenic programs and therapeutic vulnerabilities in Desmoplastic Small Round Cell Tumors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	114		BEDPE BW MATRIX TXT	Rui Dong	Oct 04, 2023
GSE214594	Coordination of widespread transcription at enhancers and target genes through BRD4	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	31		BW MATRIX	Dr. Andreas Mayer	Jul 06, 2023
GSE221427	Epigenetic and transcriptomic alterations in key inflammatory pathways are established in RUNX1 deficient hematopoietic progenitors and are propagated to neutrophils.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	55		BED BW MATRIX	Alexandra Zezulin	Jul 12, 2023
GSE227941	The nucleoskeleton protein NuMA maintains local chromatin architecture partially through promoting linker histone H1’ binding to chromatin and nucleosome stacking	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	21		BIGWIG BW MATRIX NARROWPEAK	Wenxue Zhao	Mar 01, 2024